Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 1d04
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1czkRCSB PDB    PDBbind169aa, >1CZK_1|Chain... *
1czlRCSB PDB    PDBbind169aa, >1CZL_1|Chain... at 99%
1czoRCSB PDB    PDBbind169aa, >1CZO_1|Chain... at 98%
1czrRCSB PDB    PDBbind169aa, >1CZR_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1akuRCSB PDB    PDBbindFMN hq
1c7eRCSB PDB    PDBbindFMN hq
1czoRCSB PDB    PDBbindFMN hq

Entry Information
PDB ID1d04
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nameflavodoxin
Ligand NameFMN hq
EC.Number E.C.-.-.-.-
Resolution 1.85(Å)
Affinity (Kd/Ki/IC50)Kd=26uM
Release Year1999
Protein/NA SequenceCheck fasta file
Primary Reference J.Mol.Biol. v294 pp. 725-43, 1999
Ligand Properties
Formula C17H24N4O9P
Molecular Weight 459.368
Exact Mass 459.128
No. of atoms 55
No. of bonds 57
Polar Surface Area 230.64
LOGP Value -2.43      (Computed with XLOGP3)
-1.57      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 13
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P10340  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com