Browse entries in the PDBbind-CN Database

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Related entries of code: 1d09
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1q95RCSB PDB    PDBbind153aa, >1Q95_2|Chains... at 100%
2fzcRCSB PDB    PDBbind153aa, >2FZC_2|Chains... at 100%
2fzgRCSB PDB    PDBbind153aa, >2FZG_2|Chains... at 100%
2fzkRCSB PDB    PDBbind153aa, >2FZK_2|Chains... at 100%
2h3eRCSB PDB    PDBbind153aa, >2H3E_2|Chains... at 100%
2ipoRCSB PDB    PDBbind153aa, >2IPO_2|Chains... at 100%
3at1RCSB PDB    PDBbind153aa, >3AT1_2|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1q95RCSB PDB    PDBbindPAL
5g1nRCSB PDB    PDBbindPAL
6jaoRCSB PDB    PDBbindPAL
Entry Information
PDB ID1d09
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nameaspartate carbamoyltransferase
Ligand NamePAL
EC.Number E.C.2.1.3.2
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Ki=27nM
Release Year2000
Protein/NA SequenceCheck fasta file
Primary Reference Proteins v37 pp. 729-42, 1999
Ligand Properties
Formula C6H11NO8P
Molecular Weight 256.127
Exact Mass 256.022
No. of atoms 27
No. of bonds 26
Polar Surface Area 177.98
LOGP Value -0.96      (Computed with XLOGP3)
-1.84      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0A786  P0A7F3  
Entrez Gene IDNCBI Entrez Gene ID: 61753903  948767  61753902  948763  
ASDInformation of known allosteric effects of PDB entries
 
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