Browse entries in the PDBbind-CN Database

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Related entries of code: 1dud
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2hr6RCSB PDB    PDBbind152aa, >2HR6_1|Chain... at 100%
2hrmRCSB PDB    PDBbind152aa, >2HRM_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2hr6RCSB PDB    PDBbindDUD

Entry Information
PDB ID1dud
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namedeoxyuridine 5'-triphosphate nucleotidohydrolase
Ligand NameDUD
EC.Number E.C.3.6.1.23
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Ki=15uM
Release Year1996
Protein/NA SequenceCheck fasta file
Primary Reference Nat.Struct.Biol. v3 pp. 532-8, 1996
Ligand Properties
Formula C9H16N2O11P2
Molecular Weight 390.178
Exact Mass 390.023
No. of atoms 40
No. of bonds 41
Polar Surface Area 231.11
LOGP Value -4.31      (Computed with XLOGP3)
-2.47      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 13
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P06968  
Entrez Gene IDNCBI Entrez Gene ID: 948607  
ASDInformation of known allosteric effects of PDB entries

 
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