Browse entries in the PDBbind-CN Database

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Related entries of code: 1odj
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1odiRCSB PDB    PDBbind235aa, >1ODI_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2fqxRCSB PDB    PDBbindGMP

Entry Information
PDB ID1odj
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namepurine nucleoside phosphorylase
Ligand NameGMP
EC.Number E.C.2.4.2.28
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Kd=80uM
Release Year2003
Protein/NA SequenceCheck fasta file
Primary Reference To be Publishedv;pp.
Ligand Properties
Formula C10H13N5O5
Molecular Weight 283.241
Exact Mass 283.092
No. of atoms 33
No. of bonds 35
Polar Surface Area 159.51
LOGP Value -2.73      (Computed with XLOGP3)
-2.11      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q5SID9  
Entrez Gene IDNCBI Entrez Gene ID: 3170145  
ASDInformation of known allosteric effects of PDB entries

 
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