Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 1ppm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1apvRCSB PDB    PDBbind323aa, >1APV_1|Chain... *
1apwRCSB PDB    PDBbind323aa, >1APW_1|Chain... at 100%
1bxoRCSB PDB    PDBbind323aa, >1BXO_1|Chain... at 100%
1bxqRCSB PDB    PDBbind323aa, >1BXQ_1|Chain... at 100%
1ppkRCSB PDB    PDBbind323aa, >1PPK_1|Chain... at 100%
1pplRCSB PDB    PDBbind323aa, >1PPL_1|Chain... at 100%
2webRCSB PDB    PDBbind323aa, >2WEB_1|Chain... at 100%
2wecRCSB PDB    PDBbind323aa, >2WEC_1|Chain... at 100%
2wedRCSB PDB    PDBbind323aa, >2WED_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID1ppm
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namepenicillopepsin
Ligand Name0P1
EC.Number E.C.3.4.23.20
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Ki=1600nM
Release Year1993
Protein/NA SequenceCheck fasta file
Primary Reference Biochemistry v31 pp. 5201-14, 1992
Ligand Properties
Formula C29H41N3O9P
Molecular Weight 606.624
Exact Mass 606.258
No. of atoms 83
No. of bonds 84
Polar Surface Area 186.11
LOGP Value 3.32      (Computed with XLOGP3)
4.02      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 20
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00798  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com