Browse entries in the PDBbind-CN Database

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Related entries of code: 1rgk
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1b2mRCSB PDB    PDBbind104aa, >1B2M_2|Chains... *
1detRCSB PDB    PDBbind104aa, >1DET_1|Chain... at 100%
1rglRCSB PDB    PDBbind104aa, >1RGL_1|Chain... at 98%
1rntRCSB PDB    PDBbind104aa, >1RNT_1|Chain... at 99%
4odkRCSB PDB    PDBbind16aa, >4ODK_2|Chains... at 93%
6rntRCSB PDB    PDBbind104aa, >6RNT_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5ldmRCSB PDB    PDBbind2AM
6rntRCSB PDB    PDBbind2AM
Entry Information
PDB ID1rgk
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nameribonuclease T1 E46Q
Ligand Name2AM
EC.Number E.C.3.1.27.3
Resolution 1.87(Å)
Affinity (Kd/Ki/IC50)Kd=49.1uM
Release Year1993
Protein/NA SequenceCheck fasta file
Primary Reference J.Mol.Biol. v225 pp. 533-42, 1992
Ligand Properties
Formula C10H15N5O7P
Molecular Weight 348.229
Exact Mass 348.071
No. of atoms 38
No. of bonds 40
Polar Surface Area 202.82
LOGP Value -3.16      (Computed with XLOGP3)
-1.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00651  
Entrez Gene IDNCBI Entrez Gene ID: 5997907  
ASDInformation of known allosteric effects of PDB entries
 
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