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Related entries of code: 1v0k
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1od8RCSB PDB    PDBbind313aa, >1OD8_1|Chain... *
1v0lRCSB PDB    PDBbind313aa, >1V0L_1|Chain... at 100%
1v0mRCSB PDB    PDBbind313aa, >1V0M_1|Chain... at 100%
1v0nRCSB PDB    PDBbind313aa, >1V0N_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1v0mRCSB PDB    PDBbindXDN-XYP
Entry Information
PDB ID1v0k
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nameendo-1,4-beta-xylanase a
Ligand NameXDN-XYP
EC.Number E.C.3.2.1.8
Resolution 1.03(Å)
Affinity (Kd/Ki/IC50)Ki=8uM
Release Year2004
Protein/NA SequenceCheck fasta file
Primary Reference Chem. Commun.v16;pp.1794
Ligand Properties
Formula C10H20NO7
Molecular Weight 266.268
Exact Mass 266.124
No. of atoms 38
No. of bonds 39
Polar Surface Area 136.22
LOGP Value -3.81      (Computed with XLOGP3)
-3.32      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P26514  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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