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Related entries of code: 1yxd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1lstRCSB PDB    PDBbindLYS
1ozvRCSB PDB    PDBbindLYS
2pvuRCSB PDB    PDBbindLYS
3a9iRCSB PDB    PDBbindLYS
3lp4RCSB PDB    PDBbindLYS
3mi3RCSB PDB    PDBbindLYS
4hnnRCSB PDB    PDBbindLYS
Entry Information
PDB ID1yxd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namedihydrodipicolinate synthase
Ligand NameLYS
EC.Number E.C.4.2.1.52
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Ki=5uM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference ACTA CRYSTALLOGR.,SECT.Dv61;pp.1116-1124
Ligand Properties
Formula C6H16N2O2
Molecular Weight 148.203
Exact Mass 148.121
No. of atoms 26
No. of bonds 25
Polar Surface Area 92.58
LOGP Value -2.35      (Computed with XLOGP3)
-1.91      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0A6L2  
Entrez Gene IDNCBI Entrez Gene ID: 946952  
ASDInformation of known allosteric effects of PDB entries
 
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