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Related entries of code: 1zyr
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1i6vRCSB PDB    PDBbind99aa, >1I6V_4|Chain... *
3dxjRCSB PDB    PDBbind99aa, >3DXJ_4|Chains... at 90%
3eqlRCSB PDB    PDBbind99aa, >3EQL_4|Chains... at 92%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID1zyr
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namedna-directed rna polymerase alpha chain
Ligand NameSTD
EC.Number E.C.2.7.7.6
Resolution 3(Å)
Affinity (Kd/Ki/IC50)Ki=1.8uM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference Cell v122 pp. 541-52, 2005
Ligand Properties
Formula C32H44N2O9
Molecular Weight 600.700
Exact Mass 600.305
No. of atoms 87
No. of bonds 91
Polar Surface Area 147.16
LOGP Value 3.07      (Computed with XLOGP3)
2.79      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q5SHR6  Q8RQE7  Q8RQE8  Q8RQE9  Q5SKW1  
Entrez Gene IDNCBI Entrez Gene ID: 3169128  3169896  3169754  3169736  3169450  
ASDInformation of known allosteric effects of PDB entries

 
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