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Related entries of code: 2a4m
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1yidRCSB PDB    PDBbind351aa, >1YID_1|Chains... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1qawRCSB PDB    PDBbindTRP
3f3aRCSB PDB    PDBbindTRP
3qs4RCSB PDB    PDBbindTRP
3qs5RCSB PDB    PDBbindTRP
3qs6RCSB PDB    PDBbindTRP
3rziRCSB PDB    PDBbindTRP
4us3RCSB PDB    PDBbindTRP
4us4RCSB PDB    PDBbindTRP
5eb2RCSB PDB    PDBbindTRP
5k5sRCSB PDB    PDBbindTRP
5uxmRCSB PDB    PDBbindTRP
6am8RCSB PDB    PDBbindTRP
6amiRCSB PDB    PDBbindTRP
6gg5RCSB PDB    PDBbindTRP
6os6RCSB PDB    PDBbindTRP
6os5RCSB PDB    PDBbindTRP
Entry Information
PDB ID2a4m
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nametryptophanyl-tRNA synthetase ii
Ligand NameTRP
EC.Number E.C.6.1.1.2
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Kd=30uM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference J.Biol.Chem. v280 pp. 31965-73, 2005
Ligand Properties
Formula C11H13N2O2
Molecular Weight 205.233
Exact Mass 205.098
No. of atoms 28
No. of bonds 29
Polar Surface Area 80.73
LOGP Value -0.40      (Computed with XLOGP3)
0.41      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9RVD6  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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