Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 2aia
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2ai7RCSB PDB    PDBbind203aa, >2AI7_1|Chain... *
2aieRCSB PDB    PDBbind203aa, >2AIE_1|Chain... at 99%
3strRCSB PDB    PDBbind203aa, >3STR_1|Chain... at 98%
3svjRCSB PDB    PDBbind203aa, >3SVJ_1|Chain... at 98%
3sw8RCSB PDB    PDBbind203aa, >3SW8_1|Chain... at 98%
4eoxRCSB PDB    PDBbind203aa, >4EOX_1|Chain... at 98%
6ow7RCSB PDB    PDBbind202aa, >6OW7_1|Chains... at 98%
6ow2RCSB PDB    PDBbind202aa, >6OW2_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID2aia
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namepeptide deformylase
Ligand NameSB8
EC.Number E.C.3.5.1.88
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)IC50=3.9uM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference Protein Sci. v12 pp. 349-60, 2003
Ligand Properties
Formula C16H18NO4
Molecular Weight 288.318
Exact Mass 288.124
No. of atoms 39
No. of bonds 40
Polar Surface Area 71.2
LOGP Value 2.20      (Computed with XLOGP3)
0.52      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8DP79  
Entrez Gene IDNCBI Entrez Gene ID: 60233589  61429639  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com