Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 2gek
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2gejRCSB PDB    PDBbind406aa, >2GEJ_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1d2eRCSB PDB    PDBbindGDP
1darRCSB PDB    PDBbindGDP
1fzqRCSB PDB    PDBbindGDP
1r5nRCSB PDB    PDBbindGDP
1ryfRCSB PDB    PDBbindGDP
1tpzRCSB PDB    PDBbindGDP
1tq4RCSB PDB    PDBbindGDP
1u2rRCSB PDB    PDBbindGDP
2g83RCSB PDB    PDBbindGDP
2h5eRCSB PDB    PDBbindGDP
2qm7RCSB PDB    PDBbindGDP
2rcnRCSB PDB    PDBbindGDP
2wibRCSB PDB    PDBbindGDP
2wjgRCSB PDB    PDBbindGDP
2xtoRCSB PDB    PDBbindGDP
2y4kRCSB PDB    PDBbindGDP
2y4lRCSB PDB    PDBbindGDP
3a1sRCSB PDB    PDBbindGDP
3a1tRCSB PDB    PDBbindGDP
3bbfRCSB PDB    PDBbindGDP
3cphRCSB PDB    PDBbindGDP
3cpjRCSB PDB    PDBbindGDP
3d7mRCSB PDB    PDBbindGDP
3lzzRCSB PDB    PDBbindGDP
3okcRCSB PDB    PDBbindGDP
3zy2RCSB PDB    PDBbindGDP
4dcsRCSB PDB    PDBbindGDP
4idoRCSB PDB    PDBbindGDP
4jycRCSB PDB    PDBbindGDP
4kv9RCSB PDB    PDBbindGDP
4lhvRCSB PDB    PDBbindGDP
4li0RCSB PDB    PDBbindGDP
4lpsRCSB PDB    PDBbindGDP
4nonRCSB PDB    PDBbindGDP
4nxvRCSB PDB    PDBbindGDP
4or6RCSB PDB    PDBbindGDP
4p4tRCSB PDB    PDBbindGDP
4pdeRCSB PDB    PDBbindGDP
4q46RCSB PDB    PDBbindGDP
4rcgRCSB PDB    PDBbindGDP
4rd0RCSB PDB    PDBbindGDP
4rd3RCSB PDB    PDBbindGDP
4rd6RCSB PDB    PDBbindGDP
5aqkRCSB PDB    PDBbindGDP
5goeRCSB PDB    PDBbindGDP
5izkRCSB PDB    PDBbindGDP
5m04RCSB PDB    PDBbindGDP
5mi3RCSB PDB    PDBbindGDP
5nkkRCSB PDB    PDBbindGDP
6g0zRCSB PDB    PDBbindGDP
6jfkRCSB PDB    PDBbindGDP
6h4dRCSB PDB    PDBbindGDP
5ymxRCSB PDB    PDBbindGDP
5mi9RCSB PDB    PDBbindGDP
6u9vRCSB PDB    PDBbindGDP
Entry Information
PDB ID2gek
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namephosphatidylinositol mannosyltransferase (PimA)
Ligand NameGDP
EC.Number E.C.-.-.-.-
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Kd=0.03uM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference (2007) J.Biol.Chem. Vol. 282: pp. 20705-20714
Ligand Properties
Formula C10H18N5O11P2
Molecular Weight 446.224
Exact Mass 446.048
No. of atoms 46
No. of bonds 48
Polar Surface Area 287.32
LOGP Value -4.43      (Computed with XLOGP3)
-3.33      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 16
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A0QWG6  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com