Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 2hd1
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3jsiRCSB PDB    PDBbind329aa, >3JSI_1|Chains... at 98%
3jswRCSB PDB    PDBbind329aa, >3JSW_1|Chains... at 98%
3k3eRCSB PDB    PDBbind326aa, >3K3E_1|Chains... at 99%
3k3hRCSB PDB    PDBbind326aa, >3K3H_1|Chains... at 99%
3qi3RCSB PDB    PDBbind533aa, >3QI3_1|Chains... *
3qi4RCSB PDB    PDBbind533aa, >3QI4_1|Chains... at 100%
4e90RCSB PDB    PDBbind329aa, >4E90_1|Chains... at 98%
4g2jRCSB PDB    PDBbind329aa, >4G2J_1|Chains... at 98%
4g2lRCSB PDB    PDBbind329aa, >4G2L_1|Chains... at 98%
4gh6RCSB PDB    PDBbind326aa, >4GH6_1|Chains... at 99%
4qgeRCSB PDB    PDBbind533aa, >4QGE_1|Chains... at 99%
4y87RCSB PDB    PDBbind533aa, >4Y87_1|Chains... at 99%
4y8cRCSB PDB    PDBbind533aa, >4Y8C_1|Chains... at 99%
6a3nRCSB PDB    PDBbind322aa, >6A3N_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1sojRCSB PDB    PDBbindIBM
1zklRCSB PDB    PDBbindIBM
1zknRCSB PDB    PDBbindIBM
2r8qRCSB PDB    PDBbindIBM
3ecnRCSB PDB    PDBbindIBM
3ituRCSB PDB    PDBbindIBM
3jwrRCSB PDB    PDBbindIBM
3qi4RCSB PDB    PDBbindIBM
Entry Information
PDB ID2hd1
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namephosphodiesterase 9a
Ligand NameIBM
EC.Number E.C.-.-.-.-
Resolution 2.23(Å)
Affinity (Kd/Ki/IC50)IC50=500uM
Release Year2006
Protein/NA SequenceCheck fasta file
Primary Reference Proc.Natl.Acad.Sci.USA v101 pp. 9624-9, 2004
Ligand Properties
Formula C10H14N4O2
Molecular Weight 222.244
Exact Mass 222.112
No. of atoms 30
No. of bonds 31
Polar Surface Area 72.68
LOGP Value 0.95      (Computed with XLOGP3)
0.08      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O76083  
Entrez Gene IDNCBI Entrez Gene ID: 5152  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com