Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 2jdm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2bojRCSB PDB    PDBbind114aa, >2BOJ_1|Chains... at 100%
2jdhRCSB PDB    PDBbind115aa, >2JDH_1|Chains... *
2jdkRCSB PDB    PDBbind115aa, >2JDK_1|Chains... at 100%
2jdnRCSB PDB    PDBbind115aa, >2JDN_1|Chains... at 99%
2jdpRCSB PDB    PDBbind115aa, >2JDP_1|Chains... at 99%
2jduRCSB PDB    PDBbind115aa, >2JDU_1|Chains... at 99%
2jdyRCSB PDB    PDBbind115aa, >2JDY_1|Chains... at 99%
3dcqRCSB PDB    PDBbind114aa, >3DCQ_1|Chains... at 100%
3zdvRCSB PDB    PDBbind115aa, >3ZDV_1|Chains... at 100%
5a3oRCSB PDB    PDBbind114aa, >5A3O_1|Chains... at 100%
5d2aRCSB PDB    PDBbind114aa, >5D2A_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1rdiRCSB PDB    PDBbindMFU
2boiRCSB PDB    PDBbindMFU
2bt9RCSB PDB    PDBbindMFU
2jdpRCSB PDB    PDBbindMFU
2jduRCSB PDB    PDBbindMFU
4csdRCSB PDB    PDBbindMFU
5a6xRCSB PDB    PDBbindMFU
5mxfRCSB PDB    PDBbindMFU
6htnRCSB PDB    PDBbindMFU
6h9vRCSB PDB    PDBbindMFU
Entry Information
PDB ID2jdm
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameFUCOSE-BINDING LECTIN PA-IIL(S22A)
Ligand NameMFU
EC.Number E.C.-.-.-.-
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Kd=3.96uM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference BMC Structural Biology. 2007, 7:36.
Ligand Properties
Formula C7H14O5
Molecular Weight 178.183
Exact Mass 178.084
No. of atoms 26
No. of bonds 26
Polar Surface Area 79.15
LOGP Value -1.55      (Computed with XLOGP3)
-1.54      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9HYN5  
Entrez Gene IDNCBI Entrez Gene ID: 882528  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com