Browse entries in the PDBbind-CN Database

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Related entries of code: 2jsd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1rmzRCSB PDB    PDBbindNGH
1ycmRCSB PDB    PDBbindNGH
1z3jRCSB PDB    PDBbindNGH
2jnpRCSB PDB    PDBbindNGH
Entry Information
PDB ID2jsd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameMatrix metalloproteinase-20
Ligand NameNGH
EC.Number E.C.3.4.24.-
Resolution NMR
Affinity (Kd/Ki/IC50)Kd=17nM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference FEBS Lett. 2007, 581, 4723-4726.
Ligand Properties
Formula C13H18N2O5S
Molecular Weight 314.357
Exact Mass 314.094
No. of atoms 39
No. of bonds 39
Polar Surface Area 101.49
LOGP Value 1.69      (Computed with XLOGP3)
2.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O60882  
Entrez Gene IDNCBI Entrez Gene ID: 9313  
ASDInformation of known allosteric effects of PDB entries
 
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