Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 2o4s
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ebyRCSB PDB    PDBbind99aa, >1EBY_1|Chains... at 90%
1hxwRCSB PDB    PDBbind99aa, >1HXW_1|Chains... at 90%
1izhRCSB PDB    PDBbind99aa, >1IZH_1|Chains... at 90%
1k6cRCSB PDB    PDBbind99aa, >1K6C_1|Chains... at 91%
1k6pRCSB PDB    PDBbind99aa, >1K6P_1|Chains... at 91%
1k6tRCSB PDB    PDBbind99aa, >1K6T_1|Chains... at 91%
1k6vRCSB PDB    PDBbind99aa, >1K6V_1|Chains... at 91%
1proRCSB PDB    PDBbind99aa, >1PRO_1|Chains... at 90%
1sbgRCSB PDB    PDBbind99aa, >1SBG_1|Chains... at 90%
1t7jRCSB PDB    PDBbind99aa, >1T7J_1|Chains... at 91%
1vijRCSB PDB    PDBbind99aa, >1VIJ_1|Chains... at 90%
1vikRCSB PDB    PDBbind99aa, >1VIK_1|Chains... at 90%
1zp8RCSB PDB    PDBbind99aa, >1ZP8_1|Chain... at 90%
1zpaRCSB PDB    PDBbind99aa, >1ZPA_1|Chain... at 90%
2az8RCSB PDB    PDBbind99aa, >2AZ8_1|Chain... at 91%
2az9RCSB PDB    PDBbind99aa, >2AZ9_1|Chain... at 90%
2i4dRCSB PDB    PDBbind99aa, >2I4D_1|Chains... at 90%
2i4uRCSB PDB    PDBbind99aa, >2I4U_1|Chains... at 90%
2i4wRCSB PDB    PDBbind99aa, >2I4W_1|Chains... at 90%
2o4kRCSB PDB    PDBbind99aa, >2O4K_1|Chains... at 90%
2o4pRCSB PDB    PDBbind99aa, >2O4P_1|Chains... at 90%
2p3bRCSB PDB    PDBbind99aa, >2P3B_2|Chain... at 90%
3ekpRCSB PDB    PDBbind99aa, >3EKP_1|Chains... at 90%
3ekqRCSB PDB    PDBbind99aa, >3EKQ_1|Chains... at 90%
3ektRCSB PDB    PDBbind99aa, >3EKT_1|Chains... at 90%
3ekwRCSB PDB    PDBbind99aa, >3EKW_1|Chains... at 90%
3el0RCSB PDB    PDBbind99aa, >3EL0_1|Chains... at 90%
3el4RCSB PDB    PDBbind99aa, >3EL4_1|Chains... at 92%
3el5RCSB PDB    PDBbind99aa, >3EL5_1|Chains... at 91%
3kfnRCSB PDB    PDBbind99aa, >3KFN_1|Chains... at 91%
3m9fRCSB PDB    PDBbind99aa, >3M9F_1|Chains... at 90%
3tlhRCSB PDB    PDBbind99aa, >3TLH_1|Chain... at 90%
4eqjRCSB PDB    PDBbind203aa, >4EQJ_1|Chain... *
4ll3RCSB PDB    PDBbind99aa, >4LL3_1|Chains... at 90%
4phvRCSB PDB    PDBbind99aa, >4PHV_1|Chains... at 90%
5hvpRCSB PDB    PDBbind99aa, >5HVP_1|Chains... at 90%
5ivsRCSB PDB    PDBbind99aa, >5IVS_1|Chains... at 90%
6dgxRCSB PDB    PDBbind99aa, >6DGX_1|Chains... at 91%
6dgyRCSB PDB    PDBbind99aa, >6DGY_1|Chains... at 91%
6dgzRCSB PDB    PDBbind99aa, >6DGZ_1|Chains... at 91%
6dh0RCSB PDB    PDBbind99aa, >6DH0_1|Chains... at 90%
6dh1RCSB PDB    PDBbind99aa, >6DH1_1|Chains... at 90%
6dh2RCSB PDB    PDBbind99aa, >6DH2_1|Chains... at 90%
6dh3RCSB PDB    PDBbind99aa, >6DH3_1|Chains... at 90%
6dh4RCSB PDB    PDBbind99aa, >6DH4_1|Chains... at 90%
6dh5RCSB PDB    PDBbind99aa, >6DH5_1|Chains... at 90%
6dh6RCSB PDB    PDBbind99aa, >6DH6_1|Chains... at 90%
6dh7RCSB PDB    PDBbind99aa, >6DH7_1|Chains... at 90%
6dh8RCSB PDB    PDBbind99aa, >6DH8_1|Chains... at 90%
9hvpRCSB PDB    PDBbind99aa, >9HVP_1|Chains... at 90%
6oy2RCSB PDB    PDBbind99aa, >6OY2_1|Chains... at 91%
6oy0RCSB PDB    PDBbind99aa, >6OY0_1|Chains... at 91%
6oxzRCSB PDB    PDBbind99aa, >6OXZ_1|Chains... at 91%
6oxyRCSB PDB    PDBbind99aa, >6OXY_1|Chains... at 91%
6oxxRCSB PDB    PDBbind99aa, >6OXX_1|Chains... at 91%
6oxwRCSB PDB    PDBbind99aa, >6OXW_1|Chains... at 91%
6oxvRCSB PDB    PDBbind99aa, >6OXV_1|Chains... at 91%
6oxuRCSB PDB    PDBbind99aa, >6OXU_1|Chains... at 91%
6oxtRCSB PDB    PDBbind99aa, >6OXT_1|Chains... at 91%
6oxsRCSB PDB    PDBbind99aa, >6OXS_1|Chains... at 91%
6oxrRCSB PDB    PDBbind99aa, >6OXR_1|Chains... at 91%
6oxqRCSB PDB    PDBbind99aa, >6OXQ_1|Chains... at 91%
6oxpRCSB PDB    PDBbind99aa, >6OXP_1|Chains... at 91%
6oouRCSB PDB    PDBbind99aa, >6OOU_1|Chains... at 90%
6oosRCSB PDB    PDBbind99aa, >6OOS_1|Chains... at 90%
6oy1RCSB PDB    PDBbind99aa, >6OY1_1|Chains... at 91%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1muiRCSB PDB    PDBbindAB1
2q5kRCSB PDB    PDBbindAB1
2qhcRCSB PDB    PDBbindAB1
2rkfRCSB PDB    PDBbindAB1
2rkgRCSB PDB    PDBbindAB1
3ogqRCSB PDB    PDBbindAB1
4l1aRCSB PDB    PDBbindAB1
6dj1RCSB PDB    PDBbindAB1
6dj2RCSB PDB    PDBbindAB1
Entry Information
PDB ID2o4s
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameGag-Pol polyprotein (Pr160Gag-Pol)
Ligand NameAB1
EC.Number E.C.-.-.-.-
Resolution 1.54(Å)
Affinity (Kd/Ki/IC50)Kd=31pM
Release Year2006
Protein/NA SequenceCheck fasta file
Primary Reference J.Virol. 81: 5144-5154
Ligand Properties
Formula C37H48N4O5
Molecular Weight 628.801
Exact Mass 628.362
No. of atoms 94
No. of bonds 97
Polar Surface Area 120
LOGP Value 5.92      (Computed with XLOGP3)
5.38      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 18
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P03367  Q5RZ08  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com