Browse entries in the PDBbind-CN Database

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Related entries of code: 2p3d
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1b11RCSB PDB    PDBbind3TL
2az8RCSB PDB    PDBbind3TL
2az9RCSB PDB    PDBbind3TL
2azbRCSB PDB    PDBbind3TL
2azcRCSB PDB    PDBbind3TL
2hahRCSB PDB    PDBbind3TL
2p3aRCSB PDB    PDBbind3TL
2p3bRCSB PDB    PDBbind3TL
2p3cRCSB PDB    PDBbind3TL
3kfnRCSB PDB    PDBbind3TL
3slzRCSB PDB    PDBbind3TL
3tlhRCSB PDB    PDBbind3TL
5fivRCSB PDB    PDBbind3TL
6fivRCSB PDB    PDBbind3TL
Entry Information
PDB ID2p3d
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePol protein
Ligand Name3TL
EC.Number E.C.3.4.23.16
Resolution 2.8(Å)
Affinity (Kd/Ki/IC50)Ki=180nM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference J.Mol.Biol. 369: 1029-1040
Ligand Properties
Formula C50H64N6O10
Molecular Weight 909.077
Exact Mass 908.468
No. of atoms 130
No. of bonds 133
Polar Surface Area 233.52
LOGP Value 6.38      (Computed with XLOGP3)
6.42      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 8
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 33
No. of Nitrogen and Oxygen Atoms: 16
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q7SRY5  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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