Browse entries in the PDBbind-CN Database

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Related entries of code: 2r1w
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1himRCSB PDB    PDBbind217aa, >1HIM_1|Chains... at 91%
2r1xRCSB PDB    PDBbind219aa, >2R1X_1|Chain... at 94%
2r1yRCSB PDB    PDBbind219aa, >2R1Y_1|Chain... at 94%
2r23RCSB PDB    PDBbind219aa, >2R23_1|Chain... at 94%
2r2bRCSB PDB    PDBbind219aa, >2R2B_1|Chain... at 94%
3bpcRCSB PDB    PDBbind219aa, >3BPC_1|Chain... at 94%
3hzkRCSB PDB    PDBbind219aa, >3HZK_1|Chain... at 94%
3hzmRCSB PDB    PDBbind219aa, >3HZM_1|Chain... at 94%
3hzvRCSB PDB    PDBbind219aa, >3HZV_1|Chain... at 94%
3hzyRCSB PDB    PDBbind219aa, >3HZY_1|Chain... at 94%
3i02RCSB PDB    PDBbind219aa, >3I02_1|Chains... at 94%
3ijhRCSB PDB    PDBbind219aa, >3IJH_1|Chains... at 94%
3ijyRCSB PDB    PDBbind218aa, >3IJY_1|Chains... at 94%
3ikcRCSB PDB    PDBbind218aa, >3IKC_1|Chains... at 94%
5kvdRCSB PDB    PDBbind220aa, >5KVD_2|Chain... at 91%
5kvfRCSB PDB    PDBbind220aa, >5KVF_2|Chain... at 91%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID2r1w
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameFab, antibody fragment (IgG1k)
Ligand NameKDB
EC.Number E.C.-.-.-.-
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Kd=25uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) J.Mol.Biol. Vol. 377: pp. 450-468
Ligand Properties
Formula C8H12O6
Molecular Weight 204.177
Exact Mass 204.063
No. of atoms 26
No. of bonds 26
Polar Surface Area 107.22
LOGP Value -0.55      (Computed with XLOGP3)
-1.54      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A2NU21  Q52L64  P01837  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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