Browse entries in the PDBbind-CN Database

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Related entries of code: 2vfz
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1gwvRCSB PDB    PDBbind289aa, >1GWV_1|Chains... *
1gwwRCSB PDB    PDBbind289aa, >1GWW_1|Chains... at 100%
1gx0RCSB PDB    PDBbind289aa, >1GX0_1|Chains... at 100%
1gx4RCSB PDB    PDBbind289aa, >1GX4_1|Chains... at 100%
1o7oRCSB PDB    PDBbind289aa, >1O7O_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1g9rRCSB PDB    PDBbindUPF

Entry Information
PDB ID2vfz
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameN-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYL TRANSFERASE
Ligand NameUPF
EC.Number E.C.2.4.1.151
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Ki=245uM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference J.Mol.Biol. 369: 1270
Ligand Properties
Formula C15H25FN2O16P2
Molecular Weight 570.309
Exact Mass 570.066
No. of atoms 61
No. of bonds 63
Polar Surface Area 310.26
LOGP Value -5.77      (Computed with XLOGP3)
-4.69      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 14
No. of Nitrogen and Oxygen Atoms: 18
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P14769  
Entrez Gene IDNCBI Entrez Gene ID: 281780  
ASDInformation of known allosteric effects of PDB entries

 
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