Browse entries in the PDBbind-CN Database

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Related entries of code: 2vwm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ezqRCSB PDB    PDBbind134aa, >1EZQ_2|Chain... at 100%
1f0rRCSB PDB    PDBbind134aa, >1F0R_2|Chain... at 100%
1f0sRCSB PDB    PDBbind134aa, >1F0S_2|Chain... at 100%
1faxRCSB PDB    PDBbind96aa, >1FAX_2|Chain... at 98%
1fjsRCSB PDB    PDBbind52aa, >1FJS_2|Chain... at 100%
1g2lRCSB PDB    PDBbind94aa, >1G2L_2|Chain... at 100%
1g2mRCSB PDB    PDBbind94aa, >1G2M_2|Chain... at 100%
1ksnRCSB PDB    PDBbind134aa, >1KSN_2|Chain... at 100%
1lpgRCSB PDB    PDBbind134aa, >1LPG_1|Chain... at 100%
1lpkRCSB PDB    PDBbind134aa, >1LPK_1|Chain... at 100%
1lpzRCSB PDB    PDBbind134aa, >1LPZ_1|Chain... at 100%
1lqdRCSB PDB    PDBbind134aa, >1LQD_1|Chain... at 100%
1mq5RCSB PDB    PDBbind51aa, >1MQ5_2|Chain... at 100%
1mq6RCSB PDB    PDBbind51aa, >1MQ6_2|Chain... at 100%
1nfuRCSB PDB    PDBbind195aa, >1NFU_2|Chain... *
1nfwRCSB PDB    PDBbind134aa, >1NFW_2|Chain... at 100%
1nfxRCSB PDB    PDBbind134aa, >1NFX_2|Chain... at 100%
1nfyRCSB PDB    PDBbind134aa, >1NFY_2|Chain... at 100%
1v3xRCSB PDB    PDBbind52aa, >1V3X_2|Chain... at 100%
1wu1RCSB PDB    PDBbind95aa, >1WU1_2|Chain... at 100%
1xkaRCSB PDB    PDBbind95aa, >1XKA_1|Chain... at 100%
1z6eRCSB PDB    PDBbind52aa, >1Z6E_2|Chain... at 100%
2bmgRCSB PDB    PDBbind53aa, >2BMG_1|Chain... at 100%
2bohRCSB PDB    PDBbind134aa, >2BOH_1|Chain... at 100%
2bokRCSB PDB    PDBbind55aa, >2BOK_2|Chain... at 100%
2bq6RCSB PDB    PDBbind52aa, >2BQ6_1|Chain... at 100%
2bq7RCSB PDB    PDBbind52aa, >2BQ7_1|Chain... at 100%
2bqwRCSB PDB    PDBbind52aa, >2BQW_1|Chain... at 100%
2cjiRCSB PDB    PDBbind134aa, >2CJI_2|Chain... at 100%
2ei6RCSB PDB    PDBbind54aa, >2EI6_2|Chain... at 100%
2fzzRCSB PDB    PDBbind52aa, >2FZZ_2|Chain... at 100%
2g00RCSB PDB    PDBbind52aa, >2G00_2|Chain... at 100%
2j2uRCSB PDB    PDBbind134aa, >2J2U_2|Chain... at 100%
2j34RCSB PDB    PDBbind134aa, >2J34_2|Chain... at 100%
2j4iRCSB PDB    PDBbind134aa, >2J4I_2|Chain... at 100%
2j94RCSB PDB    PDBbind134aa, >2J94_2|Chain... at 100%
2j95RCSB PDB    PDBbind134aa, >2J95_2|Chain... at 100%
2jkhRCSB PDB    PDBbind55aa, >2JKH_2|Chain... at 100%
2p16RCSB PDB    PDBbind52aa, >2P16_2|Chain... at 100%
2p93RCSB PDB    PDBbind52aa, >2P93_2|Chain... at 100%
2p94RCSB PDB    PDBbind52aa, >2P94_2|Chain... at 100%
2p95RCSB PDB    PDBbind52aa, >2P95_2|Chain... at 100%
2phbRCSB PDB    PDBbind51aa, >2PHB_2|Chain... at 100%
2q1jRCSB PDB    PDBbind51aa, >2Q1J_2|Chain... at 100%
2ra0RCSB PDB    PDBbind51aa, >2RA0_2|Chain... at 98%
2uwlRCSB PDB    PDBbind134aa, >2UWL_2|Chain... at 100%
2uwoRCSB PDB    PDBbind134aa, >2UWO_2|Chain... at 100%
2uwpRCSB PDB    PDBbind134aa, >2UWP_2|Chain... at 100%
2vh0RCSB PDB    PDBbind134aa, >2VH0_2|Chain... at 100%
2vh6RCSB PDB    PDBbind134aa, >2VH6_2|Chain... at 100%
2vvcRCSB PDB    PDBbind55aa, >2VVC_2|Chains... at 100%
2vvuRCSB PDB    PDBbind55aa, >2VVU_2|Chain... at 100%
2vvvRCSB PDB    PDBbind55aa, >2VVV_2|Chain... at 100%
2vwlRCSB PDB    PDBbind55aa, >2VWL_2|Chain... at 100%
2vwnRCSB PDB    PDBbind55aa, >2VWN_2|Chain... at 100%
2vwoRCSB PDB    PDBbind55aa, >2VWO_2|Chain... at 100%
2w26RCSB PDB    PDBbind51aa, >2W26_2|Chain... at 100%
2w3iRCSB PDB    PDBbind51aa, >2W3I_2|Chain... at 100%
2w3kRCSB PDB    PDBbind51aa, >2W3K_2|Chain... at 100%
2wygRCSB PDB    PDBbind134aa, >2WYG_2|Chain... at 100%
2wyjRCSB PDB    PDBbind134aa, >2WYJ_2|Chain... at 100%
2xbvRCSB PDB    PDBbind55aa, >2XBV_2|Chain... at 100%
2xbwRCSB PDB    PDBbind55aa, >2XBW_2|Chain... at 100%
2xbxRCSB PDB    PDBbind55aa, >2XBX_2|Chain... at 100%
2xc0RCSB PDB    PDBbind55aa, >2XC0_2|Chain... at 100%
2xc4RCSB PDB    PDBbind55aa, >2XC4_2|Chain... at 100%
2y5fRCSB PDB    PDBbind54aa, >2Y5F_2|Chain... at 100%
2y5gRCSB PDB    PDBbind54aa, >2Y5G_2|Chain... at 100%
2y5hRCSB PDB    PDBbind54aa, >2Y5H_2|Chain... at 100%
2y7xRCSB PDB    PDBbind134aa, >2Y7X_2|Chain... at 100%
2y7zRCSB PDB    PDBbind134aa, >2Y7Z_2|Chain... at 100%
2y80RCSB PDB    PDBbind134aa, >2Y80_2|Chain... at 100%
2y81RCSB PDB    PDBbind134aa, >2Y81_2|Chain... at 100%
2y82RCSB PDB    PDBbind134aa, >2Y82_2|Chain... at 100%
3cenRCSB PDB    PDBbind52aa, >3CEN_2|Chain... at 100%
3cs7RCSB PDB    PDBbind52aa, >3CS7_2|Chain... at 100%
3ensRCSB PDB    PDBbind94aa, >3ENS_1|Chains... at 100%
3ffgRCSB PDB    PDBbind52aa, >3FFG_2|Chain... at 100%
3hptRCSB PDB    PDBbind94aa, >3HPT_1|Chains... at 100%
3iitRCSB PDB    PDBbind54aa, >3IIT_2|Chain... at 100%
3k9xRCSB PDB    PDBbind94aa, >3K9X_1|Chains... at 100%
3kl6RCSB PDB    PDBbind57aa, >3KL6_2|Chain... at 94%
3kqbRCSB PDB    PDBbind52aa, >3KQB_2|Chain... at 100%
3kqcRCSB PDB    PDBbind52aa, >3KQC_2|Chain... at 100%
3kqdRCSB PDB    PDBbind52aa, >3KQD_2|Chain... at 100%
3kqeRCSB PDB    PDBbind52aa, >3KQE_2|Chain... at 100%
3liwRCSB PDB    PDBbind51aa, >3LIW_2|Chain... at 100%
3m36RCSB PDB    PDBbind52aa, >3M36_2|Chain... at 100%
3m37RCSB PDB    PDBbind52aa, >3M37_2|Chain... at 100%
3q3kRCSB PDB    PDBbind54aa, >3Q3K_2|Chain... at 100%
3sw2RCSB PDB    PDBbind94aa, >3SW2_1|Chain... at 100%
4a7iRCSB PDB    PDBbind96aa, >4A7I_1|Chain... at 100%
4btiRCSB PDB    PDBbind96aa, >4BTI_1|Chains... at 100%
4bttRCSB PDB    PDBbind96aa, >4BTT_1|Chains... at 100%
4btuRCSB PDB    PDBbind96aa, >4BTU_1|Chains... at 100%
4y79RCSB PDB    PDBbind134aa, >4Y79_2|Chain... at 100%
5k0hRCSB PDB    PDBbind51aa, >5K0H_2|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID2vwm
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameActivated Factor Xa
Ligand NameLZI
EC.Number E.C.3.4.21.6
Resolution 1.96(Å)
Affinity (Kd/Ki/IC50)Ki=93nM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) Eur.J.Med.Chem. Vol. 44: pp. 2787-2795
Ligand Properties
Formula C27H26ClFN5O4S
Molecular Weight 571.043
Exact Mass 570.138
No. of atoms 65
No. of bonds 69
Polar Surface Area 149.9
LOGP Value 3.12      (Computed with XLOGP3)
3.62      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00742  
Entrez Gene IDNCBI Entrez Gene ID: 2159  
ASDInformation of known allosteric effects of PDB entries
 
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