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Related entries of code: 2y4m
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2bo4RCSB PDB    PDBbind397aa, >2BO4_1|Chains... *
2y4kRCSB PDB    PDBbind382aa, >2Y4K_1|Chains... at 99%
2y4lRCSB PDB    PDBbind382aa, >2Y4L_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2y4m
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameMannosylglycerate synthase (MGS)
Ligand NameGDX
EC.Number E.C.2.4.1.217
Resolution 2.7(Å)
Affinity (Kd/Ki/IC50)Kd=0.345uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) J.Biol.Chem. Vol. 286: pp. 15155-15164.
Ligand Properties
Formula C16H28N5O16P2
Molecular Weight 608.365
Exact Mass 608.101
No. of atoms 67
No. of bonds 70
Polar Surface Area 368.12
LOGP Value -7.23      (Computed with XLOGP3)
-4.71      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 8
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 15
No. of Nitrogen and Oxygen Atoms: 21
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): D0MI02  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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