Browse entries in the PDBbind-CN Database

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Related entries of code: 2y59
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2xdmRCSB PDB    PDBbind466aa, >2XDM_1|Chains... at 100%
2xk1RCSB PDB    PDBbind466aa, >2XK1_1|Chains... at 100%
2xlnRCSB PDB    PDBbind489aa, >2XLN_1|Chains... *
2y4aRCSB PDB    PDBbind466aa, >2Y4A_1|Chains... at 100%
2y55RCSB PDB    PDBbind466aa, >2Y55_1|Chains... at 100%
3zczRCSB PDB    PDBbind467aa, >3ZCZ_1|Chains... at 100%
3zvtRCSB PDB    PDBbind466aa, >3ZVT_1|Chains... at 100%
3zvwRCSB PDB    PDBbind466aa, >3ZVW_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2y2iRCSB PDB    PDBbindZA3

Entry Information
PDB ID2y59
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameD-ALANYL-D-ALANINE CARBOXYPEPTIDASE
Ligand NameZA3
EC.Number E.C.3.4.16.4
Resolution 2.5(Å)
Affinity (Kd/Ki/IC50)Ki=0.36uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) J.Am.Chem.Soc. Vol. 133: pp. 10839
Ligand Properties
Formula C8H9BN2O5
Molecular Weight 223.978
Exact Mass 224.060
No. of atoms 25
No. of bonds 25
Polar Surface Area 115.38
LOGP Value -0.03      (Computed with XLOGP3)
0.67      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P39045  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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