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Related entries of code: 2yaz
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2yayRCSB PDB    PDBbind271aa, >2YAY_1|Chain... *
2yb0RCSB PDB    PDBbind271aa, >2YB0_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1bp0RCSB PDB    PDBbindUMP
1jmfRCSB PDB    PDBbindUMP
1jmgRCSB PDB    PDBbindUMP
1jmiRCSB PDB    PDBbindUMP
1njbRCSB PDB    PDBbindUMP
1njdRCSB PDB    PDBbindUMP
1tsvRCSB PDB    PDBbindUMP
1tsyRCSB PDB    PDBbindUMP
3hb8RCSB PDB    PDBbindUMP
Entry Information
PDB ID2yaz
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameDUTPASE
Ligand NameUMP
EC.Number E.C.3.6.1.23
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Kd=7.3uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) J.Biol.Chem. Vol. 286: pp. 16470-16481
Ligand Properties
Formula C9H14N2O8P
Molecular Weight 309.190
Exact Mass 309.049
No. of atoms 34
No. of bonds 35
Polar Surface Area 167.83
LOGP Value -3.14      (Computed with XLOGP3)
-2.14      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O15826  
Entrez Gene IDNCBI Entrez Gene ID: 5649078  
ASDInformation of known allosteric effects of PDB entries
 
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