Browse entries in the PDBbind-CN Database

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Related entries of code: 2ydf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1gniRCSB PDB    PDBbind585aa, >1GNI_1|Chain... *
1gnjRCSB PDB    PDBbind585aa, >1GNJ_1|Chain... at 100%
1h9zRCSB PDB    PDBbind585aa, >1H9Z_1|Chain... at 100%
1ha2RCSB PDB    PDBbind585aa, >1HA2_1|Chain... at 100%
1hk1RCSB PDB    PDBbind585aa, >1HK1_1|Chain... at 100%
1hk2RCSB PDB    PDBbind585aa, >1HK2_1|Chain... at 99%
1hk3RCSB PDB    PDBbind585aa, >1HK3_1|Chain... at 99%
1hk4RCSB PDB    PDBbind585aa, >1HK4_1|Chain... at 100%
1hk5RCSB PDB    PDBbind585aa, >1HK5_1|Chain... at 99%
3a73RCSB PDB    PDBbind585aa, >3A73_1|Chains... at 100%
3cx9RCSB PDB    PDBbind582aa, >3CX9_1|Chain... at 100%
6ezqRCSB PDB    PDBbind585aa, >6EZQ_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2ydf
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameSERUM ALBUMIN
Ligand NameIO3
EC.Number E.C.-.-.-.-
Resolution 2.75(Å)
Affinity (Kd/Ki/IC50)Kd=22nM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Bmc Struct.Biol. Vol. 11: pp. 18-18
Ligand Properties
Formula C11H11I3O3
Molecular Weight 571.917
Exact Mass 571.784
No. of atoms 28
No. of bonds 28
Polar Surface Area 57.53
LOGP Value 5.40      (Computed with XLOGP3)
3.86      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P02768  
Entrez Gene IDNCBI Entrez Gene ID: 213  
ASDInformation of known allosteric effects of PDB entries

 
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