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Related entries of code: 2ydt
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5m1zRCSB PDB    PDBbind367aa, >5M1Z_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2ydt
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameEXO-1,5-ALPHA-L-ARABINOFURANOBIOSIDASE
Ligand NameEDG-AHR
EC.Number E.C.3.2.1.55
Resolution 1.6(Å)
Affinity (Kd/Ki/IC50)Ki=3.0uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Chem.Commun.(Camb.) Vol. 47: pp. 9684
Ligand Properties
Formula C10H20NO7
Molecular Weight 266.268
Exact Mass 266.124
No. of atoms 38
No. of bonds 39
Polar Surface Area 136.22
LOGP Value -3.26      (Computed with XLOGP3)
-3.32      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): B8ZY56  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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