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Related entries of code: 3ad8
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3ad7RCSB PDB    PDBbind99aa, >3AD7_4|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3ad8
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namewild-type heterotetrameric sarcosine oxidase (SO) from Corynebacterium sp. U-96
Ligand NamePYC
EC.Number E.C.1.5.3.1
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Kd=0.69mM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2010) J.Biochem. Vol. 148(4): pp. 491-505
Ligand Properties
Formula C5H5NO2
Molecular Weight 111.099
Exact Mass 111.032
No. of atoms 13
No. of bonds 13
Polar Surface Area 53.09
LOGP Value 1.36      (Computed with XLOGP3)
0.71      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q50LE9  Q50LF0  Q50LF1  Q50LF2  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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