Browse entries in the PDBbind-CN Database

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Related entries of code: 3ch9
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1w9uRCSB PDB    PDBbind433aa, >1W9U_1|Chains... *
1w9vRCSB PDB    PDBbind433aa, >1W9V_1|Chains... at 100%
2a3aRCSB PDB    PDBbind433aa, >2A3A_1|Chains... at 100%
2a3bRCSB PDB    PDBbind433aa, >2A3B_1|Chains... at 100%
2a3cRCSB PDB    PDBbind433aa, >2A3C_1|Chains... at 100%
2iuzRCSB PDB    PDBbind433aa, >2IUZ_1|Chains... at 100%
3chcRCSB PDB    PDBbind433aa, >3CHC_1|Chains... at 100%
3chdRCSB PDB    PDBbind433aa, >3CHD_1|Chains... at 100%
3cheRCSB PDB    PDBbind433aa, >3CHE_1|Chains... at 100%
3chfRCSB PDB    PDBbind433aa, >3CHF_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2xucRCSB PDB    PDBbindXRG

Entry Information
PDB ID3ch9
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAfChiB1
Ligand NameXRG
EC.Number E.C.3.2.1.14
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)IC50=500uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Chem.Biol. Vol. 15: pp. 295-301
Ligand Properties
Formula C4H11N4O
Molecular Weight 131.156
Exact Mass 131.093
No. of atoms 20
No. of bonds 19
Polar Surface Area 81.12
LOGP Value -0.25      (Computed with XLOGP3)
-1.58      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q873X9  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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