Browse entries in the PDBbind-CN Database

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Related entries of code: 3d27
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1xnzRCSB PDB    PDBbind264aa, >1XNZ_1|Chain... at 100%
1yvmRCSB PDB    PDBbind264aa, >1YVM_1|Chain... at 99%
2bb7RCSB PDB    PDBbind264aa, >2BB7_1|Chain... at 100%
2evcRCSB PDB    PDBbind264aa, >2EVC_1|Chain... at 100%
2evmRCSB PDB    PDBbind264aa, >2EVM_1|Chain... at 100%
2evoRCSB PDB    PDBbind264aa, >2EVO_1|Chains... at 100%
2gg0RCSB PDB    PDBbind263aa, >2GG0_1|Chain... at 100%
2gg2RCSB PDB    PDBbind263aa, >2GG2_1|Chain... at 100%
2gg3RCSB PDB    PDBbind263aa, >2GG3_1|Chain... at 100%
2gg5RCSB PDB    PDBbind263aa, >2GG5_1|Chain... at 100%
2gg7RCSB PDB    PDBbind263aa, >2GG7_1|Chain... at 100%
2gg8RCSB PDB    PDBbind263aa, >2GG8_1|Chain... at 100%
2gg9RCSB PDB    PDBbind263aa, >2GG9_1|Chain... at 100%
2ggbRCSB PDB    PDBbind263aa, >2GGB_1|Chain... at 100%
2p98RCSB PDB    PDBbind262aa, >2P98_1|Chain... at 100%
2p99RCSB PDB    PDBbind261aa, >2P99_1|Chain... at 100%
2p9aRCSB PDB    PDBbind262aa, >2P9A_1|Chain... at 100%
2q92RCSB PDB    PDBbind262aa, >2Q92_1|Chain... at 100%
2q93RCSB PDB    PDBbind263aa, >2Q93_1|Chain... at 100%
2q94RCSB PDB    PDBbind262aa, >2Q94_1|Chain... at 100%
2q95RCSB PDB    PDBbind263aa, >2Q95_1|Chain... at 100%
2q96RCSB PDB    PDBbind263aa, >2Q96_1|Chain... at 100%
4a6vRCSB PDB    PDBbind265aa, >4A6V_1|Chains... *
4a6wRCSB PDB    PDBbind264aa, >4A6W_1|Chain... at 99%
4pncRCSB PDB    PDBbind264aa, >4PNC_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3d27
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameE. coli methionine aminopeptidase
Ligand NameW29
EC.Number E.C.3.4.11.18
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)IC50=55.7uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) J.Med.Chem. Vol. 51: pp. 6110-6120
Ligand Properties
Formula C12H12O2S
Molecular Weight 220.287
Exact Mass 220.056
No. of atoms 27
No. of bonds 28
Polar Surface Area 68.7
LOGP Value 3.35      (Computed with XLOGP3)
3.39      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0AE18  
Entrez Gene IDNCBI Entrez Gene ID: 61754842  947882  
ASDInformation of known allosteric effects of PDB entries
 
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