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Related entries of code: 3dx3
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1htyRCSB PDB    PDBbind1015aa, >1HTY_1|Chain... at 100%
1hwwRCSB PDB    PDBbind1015aa, >1HWW_1|Chain... at 100%
1hxkRCSB PDB    PDBbind1015aa, >1HXK_1|Chain... at 100%
1ps3RCSB PDB    PDBbind1045aa, >1PS3_1|Chain... *
1qwuRCSB PDB    PDBbind1045aa, >1QWU_1|Chain... at 98%
1qx1RCSB PDB    PDBbind1045aa, >1QX1_1|Chain... at 98%
2f18RCSB PDB    PDBbind1045aa, >2F18_1|Chain... at 98%
2f1aRCSB PDB    PDBbind1045aa, >2F1A_1|Chain... at 98%
2f1bRCSB PDB    PDBbind1045aa, >2F1B_1|Chain... at 98%
2f7oRCSB PDB    PDBbind1045aa, >2F7O_1|Chain... at 98%
2f7pRCSB PDB    PDBbind1045aa, >2F7P_1|Chain... at 98%
2fyvRCSB PDB    PDBbind1045aa, >2FYV_1|Chain... at 98%
2ow6RCSB PDB    PDBbind1045aa, >2OW6_1|Chain... at 98%
2ow7RCSB PDB    PDBbind1045aa, >2OW7_1|Chain... at 98%
3d4yRCSB PDB    PDBbind1045aa, >3D4Y_1|Chain... at 98%
3d4zRCSB PDB    PDBbind1045aa, >3D4Z_1|Chain... at 98%
3d50RCSB PDB    PDBbind1045aa, >3D50_1|Chain... at 98%
3d51RCSB PDB    PDBbind1045aa, >3D51_1|Chain... at 98%
3d52RCSB PDB    PDBbind1045aa, >3D52_1|Chain... at 98%
3ddfRCSB PDB    PDBbind1045aa, >3DDF_1|Chain... at 98%
3ddgRCSB PDB    PDBbind1045aa, >3DDG_1|Chain... at 98%
3dx0RCSB PDB    PDBbind1045aa, >3DX0_1|Chain... at 98%
3dx1RCSB PDB    PDBbind1045aa, >3DX1_1|Chain... at 98%
3dx2RCSB PDB    PDBbind1045aa, >3DX2_1|Chain... at 98%
3dx4RCSB PDB    PDBbind1045aa, >3DX4_1|Chain... at 98%
3ejpRCSB PDB    PDBbind1045aa, >3EJP_1|Chain... at 98%
3ejqRCSB PDB    PDBbind1045aa, >3EJQ_1|Chain... at 98%
3ejrRCSB PDB    PDBbind1045aa, >3EJR_1|Chain... at 98%
3ejsRCSB PDB    PDBbind1045aa, >3EJS_1|Chain... at 98%
3ejtRCSB PDB    PDBbind1045aa, >3EJT_1|Chain... at 98%
3ejuRCSB PDB    PDBbind1045aa, >3EJU_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3dx3
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameAlpha-mannosidase 2
Ligand NameYTB
EC.Number E.C.3.2.1.114
Resolution 1.42(Å)
Affinity (Kd/Ki/IC50)Ki=300nM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) Chembiochem Vol. 10: pp. 268-277
Ligand Properties
Formula C5H12NO4
Molecular Weight 150.153
Exact Mass 150.077
No. of atoms 22
No. of bonds 22
Polar Surface Area 108.56
LOGP Value -3.35      (Computed with XLOGP3)
-3.95      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q24451  
Entrez Gene IDNCBI Entrez Gene ID: 41126  
ASDInformation of known allosteric effects of PDB entries
 
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