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Related entries of code: 3ebl
Entries with 90% protein sequence similarity cutoff in PDBbind
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No similar entries are found!
Complexes with the same small molecule ligand
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No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3ebl
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameRice GID1
Ligand NameGA4
EC.Number E.C.3.-.-.-
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Kd=0.5uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) NATURE. V. 456: 520-524
Ligand Properties
Formula C19H24O5
Molecular Weight 332.391
Exact Mass 332.162
No. of atoms 48
No. of bonds 52
Polar Surface Area 83.83
LOGP Value 2.88      (Computed with XLOGP3)
2.14      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q6L545  
Entrez Gene IDNCBI Entrez Gene ID: 4338764  
ASDInformation of known allosteric effects of PDB entries

 
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