Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3fed
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3feeRCSB PDB    PDBbind707aa, >3FEE_1|Chain... at 100%
3ff3RCSB PDB    PDBbind707aa, >3FF3_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3bi0RCSB PDB    PDBbindBIX

Entry Information
PDB ID3fed
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameGlutamate carboxypeptidase III
Ligand NameBIX
EC.Number E.C.3.4.17.21
Resolution 1.29(Å)
Affinity (Kd/Ki/IC50)Ki=34.6nM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) Febs J. Vol. 276: pp. 4448-4462
Ligand Properties
Formula C10H20NO8P
Molecular Weight 313.241
Exact Mass 313.093
No. of atoms 40
No. of bonds 39
Polar Surface Area 193.59
LOGP Value -1.51      (Computed with XLOGP3)
-1.53      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9Y3Q0  
Entrez Gene IDNCBI Entrez Gene ID: 10003  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com