Browse entries in the PDBbind-CN Database

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Related entries of code: 3gjd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2q6hRCSB PDB    PDBbind519aa, >2Q6H_1|Chain... *
2q72RCSB PDB    PDBbind519aa, >2Q72_1|Chain... at 100%
2qjuRCSB PDB    PDBbind511aa, >2QJU_1|Chain... at 100%
3f3aRCSB PDB    PDBbind519aa, >3F3A_1|Chain... at 100%
3f3cRCSB PDB    PDBbind519aa, >3F3C_1|Chain... at 100%
3f3dRCSB PDB    PDBbind519aa, >3F3D_1|Chain... at 100%
3f3eRCSB PDB    PDBbind519aa, >3F3E_1|Chain... at 100%
3f48RCSB PDB    PDBbind519aa, >3F48_1|Chain... at 100%
3gwuRCSB PDB    PDBbind515aa, >3GWU_1|Chain... at 100%
3gwvRCSB PDB    PDBbind515aa, >3GWV_1|Chain... at 100%
3gwwRCSB PDB    PDBbind515aa, >3GWW_1|Chain... at 100%
3qs4RCSB PDB    PDBbind519aa, >3QS4_1|Chain... at 99%
3qs5RCSB PDB    PDBbind519aa, >3QS5_1|Chain... at 99%
3qs6RCSB PDB    PDBbind519aa, >3QS6_1|Chain... at 99%
4fxzRCSB PDB    PDBbind513aa, >4FXZ_1|Chain... at 99%
4hmkRCSB PDB    PDBbind513aa, >4HMK_1|Chains... at 99%
4hodRCSB PDB    PDBbind515aa, >4HOD_1|Chain... at 99%
4mm4RCSB PDB    PDBbind519aa, >4MM4_1|Chains... at 97%
4mm5RCSB PDB    PDBbind519aa, >4MM5_1|Chain... at 97%
4mm6RCSB PDB    PDBbind519aa, >4MM6_1|Chain... at 97%
4mm7RCSB PDB    PDBbind519aa, >4MM7_1|Chain... at 97%
4mm8RCSB PDB    PDBbind519aa, >4MM8_1|Chain... at 97%
4mm9RCSB PDB    PDBbind519aa, >4MM9_1|Chain... at 97%
4mmaRCSB PDB    PDBbind519aa, >4MMA_1|Chain... at 97%
4mmeRCSB PDB    PDBbind519aa, >4MME_1|Chains... at 98%
4mmfRCSB PDB    PDBbind518aa, >4MMF_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1f2oRCSB PDB    PDBbindLEU
1lanRCSB PDB    PDBbindLEU
1uskRCSB PDB    PDBbindLEU
3b3sRCSB PDB    PDBbindLEU
3b3wRCSB PDB    PDBbindLEU
3f3eRCSB PDB    PDBbindLEU
4fxzRCSB PDB    PDBbindLEU
4hmkRCSB PDB    PDBbindLEU
4hodRCSB PDB    PDBbindLEU
6hckRCSB PDB    PDBbindLEU
Entry Information
PDB ID3gjd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameTransporter
Ligand NameLEU
EC.Number E.C.-.-.-.-
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Kd=46.8nM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) Proc.Natl.Acad.Sci.USA Vol. 106: pp. 5563-5568
Ligand Properties
Formula C6H14NO2
Molecular Weight 132.181
Exact Mass 132.102
No. of atoms 23
No. of bonds 22
Polar Surface Area 64.94
LOGP Value -0.79      (Computed with XLOGP3)
-0.27      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O67854  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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