Browse entries in the PDBbind-CN Database

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Related entries of code: 3gm0
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3gkzRCSB PDB    PDBbind257aa, >3GKZ_1|Chain... *
4gqpRCSB PDB    PDBbind249aa, >4GQP_1|Chain... at 99%
4larRCSB PDB    PDBbind249aa, >4LAR_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3gm0
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nameanti-methamphetamine single chain Fv
Ligand NameB41
EC.Number E.C.-.-.-.-
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Kd=17nM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) Protein Sci. Vol. 18: pp. 2336-2345
Ligand Properties
Formula C11H16NO2
Molecular Weight 194.250
Exact Mass 194.118
No. of atoms 30
No. of bonds 31
Polar Surface Area 35.07
LOGP Value 2.00      (Computed with XLOGP3)
0.54      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 0
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACNo matched UniProt accession number (AC) found!
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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