Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3jqa
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2wd7RCSB PDB    PDBbind268aa, >2WD7_2|Chains... at 100%
3bmnRCSB PDB    PDBbind288aa, >3BMN_2|Chains... at 100%
3bmoRCSB PDB    PDBbind288aa, >3BMO_2|Chain... at 100%
3bmqRCSB PDB    PDBbind288aa, >3BMQ_2|Chains... at 100%
3jq7RCSB PDB    PDBbind288aa, >3JQ7_2|Chain... at 100%
3jq8RCSB PDB    PDBbind288aa, >3JQ8_2|Chains... at 100%
3jq9RCSB PDB    PDBbind288aa, >3JQ9_2|Chains... at 100%
3jqbRCSB PDB    PDBbind288aa, >3JQB_2|Chain... at 100%
3jqfRCSB PDB    PDBbind288aa, >3JQF_2|Chain... at 100%
3jqgRCSB PDB    PDBbind288aa, >3JQG_2|Chains... at 100%
4wcfRCSB PDB    PDBbind268aa, >4WCF_3|Chain... at 100%
5izcRCSB PDB    PDBbind268aa, >5IZC_1|Chains... at 100%
5jcjRCSB PDB    PDBbind288aa, >5JCJ_2|Chain... at 100%
5jdcRCSB PDB    PDBbind288aa, >5JDC_2|Chain... at 100%
5jdiRCSB PDB    PDBbind288aa, >5JDI_2|Chain... at 100%
5k6aRCSB PDB    PDBbind288aa, >5K6A_2|Chain... at 100%
6gclRCSB PDB    PDBbind288aa, >6GCL_2|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4m5mRCSB PDB    PDBbindDX4
Entry Information
PDB ID3jqa
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePteridine Reductase 1 (PTR1) from Trypanosoma brucei
Ligand NameDX4
EC.Number E.C.1.5.1.33
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Ki=35uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2010) J.Med.Chem. Vol. 53: pp. 221-229
Ligand Properties
Formula C5H5N5S
Molecular Weight 167.192
Exact Mass 167.027
No. of atoms 16
No. of bonds 17
Polar Surface Area 119.28
LOGP Value 0.24      (Computed with XLOGP3)
0.81      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q581W1  
Entrez Gene IDNCBI Entrez Gene ID: 3659203  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2025    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com