Browse entries in the PDBbind-CN Database

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Related entries of code: 3kdm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2am9RCSB PDB    PDBbindTES
6mdqRCSB PDB    PDBbindTES

Entry Information
PDB ID3kdm
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameImmunoglobulin, Human Anti-steroid Fab 5F2
Ligand NameTES
EC.Number E.C.-.-.-.-
Resolution 1.5(Å)
Affinity (Kd/Ki/IC50)Kd=0.1uM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2011) J. Mol. Recognit. Vol. 24: PP. 209鈥219
Ligand Properties
Formula C19H28O2
Molecular Weight 288.424
Exact Mass 288.209
No. of atoms 49
No. of bonds 52
Polar Surface Area 37.3
LOGP Value 3.33      (Computed with XLOGP3)
3.88      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACNo matched UniProt accession number (AC) found!
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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