Browse entries in the PDBbind-CN Database

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Related entries of code: 3lc5
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3lc3RCSB PDB    PDBbind57aa, >3LC3_2|Chains... at 98%
4yzuRCSB PDB    PDBbind62aa, >4YZU_2|Chain... *
4z0kRCSB PDB    PDBbind62aa, >4Z0K_2|Chain... at 100%
4zaeRCSB PDB    PDBbind62aa, >4ZAE_2|Chain... at 100%
5egmRCSB PDB    PDBbind62aa, >5EGM_2|Chain... at 100%
5tntRCSB PDB    PDBbind62aa, >5TNT_2|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3lc5
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman FIXa
Ligand NameIZX
EC.Number E.C.3.4.21.22
Resolution 2.62(Å)
Affinity (Kd/Ki/IC50)Ki=0.27uM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2010) J.Med.Chem. Vol. 53: pp. 1473-1482
Ligand Properties
Formula C24H19N4O2S
Molecular Weight 427.498
Exact Mass 427.123
No. of atoms 50
No. of bonds 54
Polar Surface Area 128
LOGP Value 6.84      (Computed with XLOGP3)
4.28      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00740  
Entrez Gene IDNCBI Entrez Gene ID: 2158  
ASDInformation of known allosteric effects of PDB entries
 
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