Browse entries in the PDBbind-CN Database

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Related entries of code: 3nal
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2agvRCSB PDB    PDBbind994aa, >2AGV_1|Chains... at 100%
2o9jRCSB PDB    PDBbind994aa, >2O9J_1|Chain... at 100%
2oa0RCSB PDB    PDBbind994aa, >2OA0_1|Chain... at 100%
3n5kRCSB PDB    PDBbind994aa, >3N5K_1|Chains... at 100%
3namRCSB PDB    PDBbind994aa, >3NAM_1|Chain... at 100%
3nanRCSB PDB    PDBbind994aa, >3NAN_1|Chain... at 100%
4j2tRCSB PDB    PDBbind994aa, >4J2T_1|Chain... at 100%
4yclRCSB PDB    PDBbind995aa, >4YCL_1|Chain... *
4ycmRCSB PDB    PDBbind994aa, >4YCM_1|Chain... at 99%
4ycnRCSB PDB    PDBbind994aa, >4YCN_1|Chain... at 99%
5a3qRCSB PDB    PDBbind995aa, >5A3Q_1|Chain... at 100%
5a3rRCSB PDB    PDBbind994aa, >5A3R_1|Chain... at 100%
5a3sRCSB PDB    PDBbind995aa, >5A3S_1|Chains... at 100%
5ncqRCSB PDB    PDBbind994aa, >5NCQ_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3nal
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameSERCA1a
Ligand NameDBK
EC.Number E.C.3.6.3.8
Resolution 2.65(Å)
Affinity (Kd/Ki/IC50)Kd=8nM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2010) J.Biol.Chem. Vol. 285: pp. 28883-28892
Ligand Properties
Formula C34H52O10
Molecular Weight 620.771
Exact Mass 620.356
No. of atoms 96
No. of bonds 98
Polar Surface Area 145.66
LOGP Value 5.31      (Computed with XLOGP3)
5.17      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 19
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): B6CAM1  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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