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Related entries of code: 3pd4
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3pd2RCSB PDB    PDBbind147aa, >3PD2_1|Chains... *
3pd3RCSB PDB    PDBbind147aa, >3PD3_1|Chains... at 100%
4rrqRCSB PDB    PDBbind147aa, >4RRQ_1|Chains... at 99%
4rrrRCSB PDB    PDBbind147aa, >4RRR_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3pd4
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameThreonyl-tRNA synthetase(Pab-NTD)
Ligand NameA3G
EC.Number E.C.6.1.1.3
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Kd=33.2uM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2010) Proc.Natl.Acad.Sci.USA. Vol. 107:pp. 22117-22121
Ligand Properties
Formula C12H18N7O4
Molecular Weight 324.316
Exact Mass 324.142
No. of atoms 41
No. of bonds 43
Polar Surface Area 176.05
LOGP Value -2.82      (Computed with XLOGP3)
-2.64      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9UZ14  
Entrez Gene IDNCBI Entrez Gene ID: 1496731  
ASDInformation of known allosteric effects of PDB entries
 
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