Browse entries in the PDBbind-CN Database

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Related entries of code: 3pke
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3iu7RCSB PDB    PDBbind288aa, >3IU7_1|Chain... *
3iu8RCSB PDB    PDBbind288aa, >3IU8_1|Chain... at 100%
3iu9RCSB PDB    PDBbind288aa, >3IU9_1|Chain... at 100%
3pkaRCSB PDB    PDBbind285aa, >3PKA_1|Chain... at 100%
3pkbRCSB PDB    PDBbind285aa, >3PKB_1|Chain... at 100%
3pkcRCSB PDB    PDBbind285aa, >3PKC_1|Chain... at 100%
3pkdRCSB PDB    PDBbind285aa, >3PKD_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3pkdRCSB PDB    PDBbindY10
4flkRCSB PDB    PDBbindY10
Entry Information
PDB ID3pke
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameMethionine aminopeptidase, MtMetAP1c
Ligand NameY10
EC.Number E.C.3.4.11.18
Resolution 1.6(Å)
Affinity (Kd/Ki/IC50)IC50>250uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Chemmedchem Vol. 6: pp. 1041-1048
Ligand Properties
Formula C21H31NO5
Molecular Weight 377.475
Exact Mass 377.220
No. of atoms 58
No. of bonds 59
Polar Surface Area 99.02
LOGP Value 2.36      (Computed with XLOGP3)
1.36      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P9WK19  
Entrez Gene IDNCBI Entrez Gene ID: 45426848  888596  
ASDInformation of known allosteric effects of PDB entries
 
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