Browse entries in the PDBbind-CN Database

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Related entries of code: 3pma
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1avgRCSB PDB    PDBbind41aa, >1AVG_1|Chain... at 100%
1etsRCSB PDB    PDBbind49aa, >1ETS_1|Chain... *
1ettRCSB PDB    PDBbind49aa, >1ETT_1|Chain... at 100%
1hrtRCSB PDB    PDBbind49aa, >1HRT_1|Chain... at 100%
1id5RCSB PDB    PDBbind49aa, >1ID5_1|Chain... at 100%
1tbqRCSB PDB    PDBbind49aa, >1TBQ_1|Chains... at 100%
1tbrRCSB PDB    PDBbind49aa, >1TBR_1|Chains... at 100%
1tocRCSB PDB    PDBbind49aa, >1TOC_1|Chains... at 100%
1uvtRCSB PDB    PDBbind49aa, >1UVT_1|Chain... at 100%
1uvuRCSB PDB    PDBbind49aa, >1UVU_1|Chain... at 100%
2odyRCSB PDB    PDBbind49aa, >2ODY_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3pma
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameThrombin
Ligand NameSCR
EC.Number E.C.3.4.21.5
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Kd=4uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Biochemistry Vol. 50: pp. 6973-6982
Ligand Properties
Formula C12H38O35S8
Molecular Weight 998.929
Exact Mass 997.896
No. of atoms 93
No. of bonds 94
Polar Surface Area 789.45
LOGP Value -7.95      (Computed with XLOGP3)
3.91      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 24
No. of Rotatable Bonds: 13
No. of Nitrogen and Oxygen Atoms: 35
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00735  
Entrez Gene IDNCBI Entrez Gene ID: 280685  
ASDInformation of known allosteric effects of PDB entries

 
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