Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3s3m
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3oylRCSB PDB    PDBbind17aa, >3OYL_3|Chain... *
3oynRCSB PDB    PDBbind17aa, >3OYN_3|Chain... at 100%
3s3nRCSB PDB    PDBbind17aa, >3S3N_3|Chain... at 100%
3s3oRCSB PDB    PDBbind17aa, >3S3O_3|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3s3nRCSB PDB    PDBbindDLU
3s3oRCSB PDB    PDBbindDLU
Entry Information
PDB ID3s3m
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePrototype Foamy Virus (PFV) intasome
Ligand NameDLU
EC.Number E.C.2.7.7.-
Resolution 2.49(Å)
Affinity (Kd/Ki/IC50)IC50=40nM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Mol.Pharmacol. Vol. 80: pp. 565-572
Ligand Properties
Formula C20H19F2N3O5
Molecular Weight 419.379
Exact Mass 419.129
No. of atoms 49
No. of bonds 52
Polar Surface Area 100.87
LOGP Value 2.44      (Computed with XLOGP3)
1.68      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P14350  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com