Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3v1r
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3ig1RCSB PDB    PDBbindJTH
Entry Information
PDB ID3v1r
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namereverse transcriptase-associated ribonuclease H domain of XMRV
Ligand NameJTH
EC.Number E.C.2.7.7.49;2.7.7.7;3.1.26.4
Resolution 2.8(Å)
Affinity (Kd/Ki/IC50)IC50=21nM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) J.Struct.Biol. Vol. 177: pp. 638-645
Ligand Properties
Formula C10H20O3
Molecular Weight 188.264
Exact Mass 188.141
No. of atoms 33
No. of bonds 33
Polar Surface Area 60.69
LOGP Value 0.81      (Computed with XLOGP3)
0.53      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q2F7J3  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2025    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com