Browse entries in the PDBbind-CN Database

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Related entries of code: 3vhk
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1y6aRCSB PDB    PDBbind366aa, >1Y6A_1|Chain... at 100%
1y6bRCSB PDB    PDBbind366aa, >1Y6B_1|Chain... at 100%
3vheRCSB PDB    PDBbind359aa, >3VHE_1|Chain... at 100%
3vidRCSB PDB    PDBbind356aa, >3VID_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3vhk
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameVascular endothelial growth factor receptor 2, VEGFR2 kinase domain
Ligand NameBPK
EC.Number E.C.2.7.10.1
Resolution 2.49(Å)
Affinity (Kd/Ki/IC50)Ki=25uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) ACS MED.CHEM.LETT. Vol. 3: pp. 342-346
Ligand Properties
Formula C18H17NO3
Molecular Weight 295.332
Exact Mass 295.121
No. of atoms 39
No. of bonds 41
Polar Surface Area 55.49
LOGP Value 3.01      (Computed with XLOGP3)
3.72      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P35968  
Entrez Gene IDNCBI Entrez Gene ID: 3791  
ASDInformation of known allosteric effects of PDB entries

 
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