Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3vjs
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1rjkRCSB PDB    PDBbind13aa, >1RJK_2|Chain... *
2o4jRCSB PDB    PDBbind13aa, >2O4J_2|Chain... at 100%
2o4rRCSB PDB    PDBbind13aa, >2O4R_2|Chain... at 100%
2zmjRCSB PDB    PDBbind13aa, >2ZMJ_2|Chain... at 100%
3vjtRCSB PDB    PDBbind13aa, >3VJT_2|Chain... at 100%
3vrtRCSB PDB    PDBbind13aa, >3VRT_2|Chain... at 100%
3vruRCSB PDB    PDBbind13aa, >3VRU_2|Chain... at 100%
3vrvRCSB PDB    PDBbind13aa, >3VRV_2|Chain... at 100%
3vrwRCSB PDB    PDBbind13aa, >3VRW_2|Chain... at 100%
3vtbRCSB PDB    PDBbind13aa, >3VTB_2|Chain... at 100%
3vtcRCSB PDB    PDBbind13aa, >3VTC_2|Chain... at 100%
3vtdRCSB PDB    PDBbind13aa, >3VTD_2|Chain... at 100%
3w5tRCSB PDB    PDBbind13aa, >3W5T_2|Chain... at 100%
3wt5RCSB PDB    PDBbind13aa, >3WT5_2|Chain... at 100%
3wt7RCSB PDB    PDBbind13aa, >3WT7_2|Chain... at 100%
4ynkRCSB PDB    PDBbind13aa, >4YNK_2|Chain... at 100%
5awjRCSB PDB    PDBbind13aa, >5AWJ_2|Chain... at 100%
5b5bRCSB PDB    PDBbind13aa, >5B5B_2|Chains... at 100%
5xpmRCSB PDB    PDBbind13aa, >5XPM_2|Chain... at 100%
5xpnRCSB PDB    PDBbind13aa, >5XPN_2|Chain... at 100%
5xpoRCSB PDB    PDBbind13aa, >5XPO_2|Chain... at 100%
5xppRCSB PDB    PDBbind13aa, >5XPP_2|Chain... at 100%
5zweRCSB PDB    PDBbind13aa, >5ZWE_2|Chain... at 100%
5zwfRCSB PDB    PDBbind13aa, >5ZWF_2|Chain... at 100%
5zwhRCSB PDB    PDBbind13aa, >5ZWH_2|Chain... at 100%
5zwiRCSB PDB    PDBbind13aa, >5ZWI_2|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3vjs
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameVitamin D3 receptor
Ligand Name10S
EC.Number E.C.-.-.-.-
Resolution 1.93(Å)
Affinity (Kd/Ki/IC50)IC50=0.64uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2011) J.Am.Chem.Soc. Vol. 133: pp. 20933-20941
Ligand Properties
Formula C17H32B10O4
Molecular Weight 408.544
Exact Mass 410.323
No. of atoms 63
No. of bonds 81
Polar Surface Area 69.92
LOGP Value 2.28      (Computed with XLOGP3)
-1.40      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 17
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 19
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P13053  Q15648  
Entrez Gene IDNCBI Entrez Gene ID: 24873  5469  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com