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Related entries of code: 3wd9
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ro6RCSB PDB    PDBbind378aa, >1RO6_1|Chains... at 97%
1xlxRCSB PDB    PDBbind398aa, >1XLX_1|Chains... at 93%
1xlzRCSB PDB    PDBbind398aa, >1XLZ_1|Chains... at 93%
1xm4RCSB PDB    PDBbind398aa, >1XM4_2|Chain... at 93%
1xm6RCSB PDB    PDBbind398aa, >1XM6_1|Chains... at 93%
1xmuRCSB PDB    PDBbind398aa, >1XMU_2|Chain... at 93%
1xmyRCSB PDB    PDBbind398aa, >1XMY_2|Chain... at 93%
1xn0RCSB PDB    PDBbind398aa, >1XN0_1|Chains... at 93%
1xosRCSB PDB    PDBbind398aa, >1XOS_1|Chain... at 93%
1xotRCSB PDB    PDBbind398aa, >1XOT_1|Chains... at 93%
1y2hRCSB PDB    PDBbind398aa, >1Y2H_1|Chains... at 93%
1y2jRCSB PDB    PDBbind398aa, >1Y2J_1|Chains... at 93%
2qylRCSB PDB    PDBbind337aa, >2QYL_1|Chain... at 97%
3d3pRCSB PDB    PDBbind353aa, >3D3P_1|Chain... at 98%
3frgRCSB PDB    PDBbind353aa, >3FRG_1|Chain... at 98%
3g45RCSB PDB    PDBbind421aa, >3G45_1|Chains... at 94%
3gwtRCSB PDB    PDBbind353aa, >3GWT_1|Chain... at 98%
3hmvRCSB PDB    PDBbind378aa, >3HMV_1|Chains... at 98%
3ly2RCSB PDB    PDBbind357aa, >3LY2_1|Chains... at 93%
3o0jRCSB PDB    PDBbind323aa, >3O0J_1|Chain... at 98%
3o56RCSB PDB    PDBbind353aa, >3O56_1|Chain... at 98%
3o57RCSB PDB    PDBbind353aa, >3O57_1|Chain... at 98%
3w5eRCSB PDB    PDBbind377aa, >3W5E_1|Chains... at 97%
4kp6RCSB PDB    PDBbind340aa, >4KP6_1|Chain... at 96%
4myqRCSB PDB    PDBbind372aa, >4MYQ_1|Chain... at 96%
4nw7RCSB PDB    PDBbind372aa, >4NW7_1|Chain... at 96%
4x0fRCSB PDB    PDBbind655aa, >4X0F_1|Chains... *
5laqRCSB PDB    PDBbind421aa, >5LAQ_1|Chain... at 94%
5ohjRCSB PDB    PDBbind421aa, >5OHJ_1|Chains... at 94%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3wd9
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamecAMP-specific 3',5'-cyclic phosphodiesterase 4B
Ligand NameQPC
EC.Number E.C.3.1.4.53
Resolution 2.5(Å)
Affinity (Kd/Ki/IC50)IC50=8.3nM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2013) Bioorg.Med.Chem. Vol. 21: pp. 7025-7037
Ligand Properties
Formula C24H27N5O2
Molecular Weight 417.503
Exact Mass 417.216
No. of atoms 58
No. of bonds 60
Polar Surface Area 110
LOGP Value 4.11      (Computed with XLOGP3)
4.86      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q07343  
Entrez Gene IDNCBI Entrez Gene ID: 5142  
ASDInformation of known allosteric effects of PDB entries
 
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