Browse entries in the PDBbind-CN Database

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Related entries of code: 3wka
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1vj5RCSB PDB    PDBbind555aa, >1VJ5_1|Chain... at 100%
1zd2RCSB PDB    PDBbind555aa, >1ZD2_1|Chain... at 100%
1zd3RCSB PDB    PDBbind555aa, >1ZD3_1|Chain... at 100%
1zd4RCSB PDB    PDBbind555aa, >1ZD4_1|Chain... at 100%
1zd5RCSB PDB    PDBbind555aa, >1ZD5_1|Chain... at 100%
3ansRCSB PDB    PDBbind336aa, >3ANS_1|Chains... at 97%
3antRCSB PDB    PDBbind336aa, >3ANT_1|Chains... at 97%
3i1yRCSB PDB    PDBbind555aa, >3I1Y_1|Chain... at 100%
3i28RCSB PDB    PDBbind555aa, >3I28_1|Chain... at 100%
3kooRCSB PDB    PDBbind555aa, >3KOO_1|Chain... at 100%
3otqRCSB PDB    PDBbind555aa, >3OTQ_1|Chain... at 100%
3pdcRCSB PDB    PDBbind344aa, >3PDC_1|Chains... at 93%
3wk4RCSB PDB    PDBbind561aa, >3WK4_1|Chain... *
3wk5RCSB PDB    PDBbind561aa, >3WK5_1|Chain... at 100%
3wk6RCSB PDB    PDBbind561aa, >3WK6_1|Chain... at 100%
3wk7RCSB PDB    PDBbind561aa, >3WK7_1|Chain... at 100%
3wk8RCSB PDB    PDBbind561aa, >3WK8_1|Chain... at 100%
3wk9RCSB PDB    PDBbind561aa, >3WK9_1|Chain... at 100%
3wkbRCSB PDB    PDBbind561aa, >3WKB_1|Chain... at 100%
3wkcRCSB PDB    PDBbind561aa, >3WKC_1|Chain... at 100%
3wkdRCSB PDB    PDBbind561aa, >3WKD_1|Chain... at 100%
3wkeRCSB PDB    PDBbind561aa, >3WKE_1|Chain... at 100%
4haiRCSB PDB    PDBbind555aa, >4HAI_1|Chain... at 100%
4j03RCSB PDB    PDBbind555aa, >4J03_1|Chain... at 100%
4jncRCSB PDB    PDBbind315aa, >4JNC_1|Chain... at 99%
4oczRCSB PDB    PDBbind555aa, >4OCZ_1|Chain... at 100%
4od0RCSB PDB    PDBbind555aa, >4OD0_1|Chain... at 100%
4x6xRCSB PDB    PDBbind336aa, >4X6X_1|Chains... at 97%
4x6yRCSB PDB    PDBbind336aa, >4X6Y_1|Chains... at 97%
4y2jRCSB PDB    PDBbind561aa, >4Y2J_1|Chain... at 100%
4y2pRCSB PDB    PDBbind561aa, >4Y2P_1|Chain... at 100%
4y2qRCSB PDB    PDBbind561aa, >4Y2Q_1|Chain... at 100%
4y2sRCSB PDB    PDBbind561aa, >4Y2S_1|Chain... at 100%
4y2tRCSB PDB    PDBbind561aa, >4Y2T_1|Chain... at 100%
4y2uRCSB PDB    PDBbind561aa, >4Y2U_1|Chain... at 100%
4y2vRCSB PDB    PDBbind561aa, >4Y2V_1|Chain... at 100%
4y2xRCSB PDB    PDBbind561aa, >4Y2X_1|Chain... at 100%
4y2yRCSB PDB    PDBbind561aa, >4Y2Y_1|Chain... at 100%
5ai0RCSB PDB    PDBbind549aa, >5AI0_1|Chain... at 99%
5ai4RCSB PDB    PDBbind549aa, >5AI4_1|Chain... at 99%
5ai5RCSB PDB    PDBbind549aa, >5AI5_1|Chain... at 99%
5ai6RCSB PDB    PDBbind549aa, >5AI6_1|Chain... at 99%
5ai8RCSB PDB    PDBbind549aa, >5AI8_1|Chain... at 99%
5ai9RCSB PDB    PDBbind549aa, >5AI9_1|Chain... at 99%
5aiaRCSB PDB    PDBbind549aa, >5AIA_1|Chain... at 99%
5aibRCSB PDB    PDBbind549aa, >5AIB_1|Chain... at 99%
5aicRCSB PDB    PDBbind549aa, >5AIC_1|Chain... at 99%
5ak3RCSB PDB    PDBbind549aa, >5AK3_1|Chain... at 99%
5ak4RCSB PDB    PDBbind549aa, >5AK4_1|Chain... at 99%
5ak5RCSB PDB    PDBbind549aa, >5AK5_1|Chain... at 99%
5ak6RCSB PDB    PDBbind549aa, >5AK6_1|Chain... at 99%
5akeRCSB PDB    PDBbind549aa, >5AKE_1|Chain... at 99%
5akgRCSB PDB    PDBbind549aa, >5AKG_1|Chain... at 99%
5akhRCSB PDB    PDBbind549aa, >5AKH_1|Chain... at 99%
5akiRCSB PDB    PDBbind549aa, >5AKI_1|Chain... at 99%
5akjRCSB PDB    PDBbind549aa, >5AKJ_1|Chain... at 99%
5akkRCSB PDB    PDBbind549aa, >5AKK_1|Chain... at 99%
5aklRCSB PDB    PDBbind549aa, >5AKL_1|Chain... at 99%
5akzRCSB PDB    PDBbind549aa, >5AKZ_1|Chain... at 99%
5aldRCSB PDB    PDBbind549aa, >5ALD_1|Chain... at 99%
5aleRCSB PDB    PDBbind549aa, >5ALE_1|Chain... at 99%
5alfRCSB PDB    PDBbind549aa, >5ALF_1|Chain... at 99%
5algRCSB PDB    PDBbind549aa, >5ALG_1|Chain... at 99%
5alhRCSB PDB    PDBbind549aa, >5ALH_1|Chain... at 99%
5aliRCSB PDB    PDBbind549aa, >5ALI_1|Chain... at 99%
5aljRCSB PDB    PDBbind549aa, >5ALJ_1|Chain... at 99%
5alkRCSB PDB    PDBbind549aa, >5ALK_1|Chain... at 99%
5allRCSB PDB    PDBbind549aa, >5ALL_1|Chain... at 99%
5almRCSB PDB    PDBbind549aa, >5ALM_1|Chain... at 99%
5alnRCSB PDB    PDBbind549aa, >5ALN_1|Chain... at 99%
5aloRCSB PDB    PDBbind549aa, >5ALO_1|Chain... at 99%
5alpRCSB PDB    PDBbind549aa, >5ALP_1|Chain... at 99%
5alrRCSB PDB    PDBbind549aa, >5ALR_1|Chain... at 99%
5alsRCSB PDB    PDBbind549aa, >5ALS_1|Chain... at 99%
5altRCSB PDB    PDBbind549aa, >5ALT_1|Chain... at 99%
5aluRCSB PDB    PDBbind549aa, >5ALU_1|Chain... at 99%
5alvRCSB PDB    PDBbind549aa, >5ALV_1|Chain... at 99%
5alwRCSB PDB    PDBbind549aa, >5ALW_1|Chain... at 99%
5alxRCSB PDB    PDBbind549aa, >5ALX_1|Chain... at 99%
5alyRCSB PDB    PDBbind549aa, >5ALY_1|Chain... at 99%
5alzRCSB PDB    PDBbind549aa, >5ALZ_1|Chain... at 99%
5am0RCSB PDB    PDBbind549aa, >5AM0_1|Chain... at 99%
5am1RCSB PDB    PDBbind549aa, >5AM1_1|Chain... at 99%
5am2RCSB PDB    PDBbind549aa, >5AM2_1|Chain... at 99%
5am3RCSB PDB    PDBbind549aa, >5AM3_1|Chain... at 99%
5am4RCSB PDB    PDBbind549aa, >5AM4_1|Chain... at 99%
5am5RCSB PDB    PDBbind549aa, >5AM5_1|Chain... at 99%
5fp0RCSB PDB    PDBbind549aa, >5FP0_1|Chain... at 99%
6aumRCSB PDB    PDBbind555aa, >6AUM_1|Chain... at 100%
6fr2RCSB PDB    PDBbind346aa, >6FR2_1|Chain... at 98%
6i5gRCSB PDB    PDBbind344aa, >6I5G_1|Chains... at 94%
6hgxRCSB PDB    PDBbind346aa, >6HGX_1|Chain... at 98%
6hgvRCSB PDB    PDBbind346aa, >6HGV_1|Chain... at 98%
5mwaRCSB PDB    PDBbind245aa, >5MWA_1|Chain... at 91%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3wka
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namesoluble epoxide hydrolase 2
Ligand NameS0G
EC.Number E.C.3.1.3.76
Resolution 2.01(Å)
Affinity (Kd/Ki/IC50)IC50=29uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Bioorg.Med.Chem. Vol. 22, pp: 2427-2434
Ligand Properties
Formula C10H16N4O2
Molecular Weight 224.260
Exact Mass 224.127
No. of atoms 32
No. of bonds 33
Polar Surface Area 84.12
LOGP Value -0.08      (Computed with XLOGP3)
0.29      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P34913  
Entrez Gene IDNCBI Entrez Gene ID: 2053  
ASDInformation of known allosteric effects of PDB entries
 
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