Browse entries in the PDBbind-CN Database

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Related entries of code: 4d1d
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4d1aRCSB PDB    PDBbind495aa, >4D1A_1|Chain... *
4d1bRCSB PDB    PDBbind495aa, >4D1B_1|Chain... at 100%
4d1cRCSB PDB    PDBbind495aa, >4D1C_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID4d1d
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namenucleobase-cation-symport-1 family hydantoin transporter Mhp1
Ligand Name5ND/5NL
EC.Number E.C.-.-.-.-
Resolution 3.7(Å)
Affinity (Kd/Ki/IC50)Kd=1.8uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Embo J. Vol. 33: pp. 1831-1844
Ligand Properties
Formula C14H12N2O2
Molecular Weight 240.257
Exact Mass 240.090
No. of atoms 30
No. of bonds 32
Polar Surface Area 58.2
LOGP Value 2.20      (Computed with XLOGP3)
2.25      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): D6R8X8  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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