Browse entries in the PDBbind-CN Database

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Related entries of code: 4d2d
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5oxkRCSB PDB    PDBbind490aa, >5OXK_1|Chain... at 99%
5oxlRCSB PDB    PDBbind490aa, >5OXL_1|Chain... at 99%
5oxmRCSB PDB    PDBbind490aa, >5OXM_1|Chain... at 99%
5oxnRCSB PDB    PDBbind490aa, >5OXN_1|Chain... at 99%
6ghjRCSB PDB    PDBbind483aa, >6GHJ_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1a1bRCSB PDB    PDBbind3-mer
1a1cRCSB PDB    PDBbind3-mer
1a30RCSB PDB    PDBbind3-mer
1at5RCSB PDB    PDBbind3-mer
1at6RCSB PDB    PDBbind3-mer
1b05RCSB PDB    PDBbind3-mer
1b0hRCSB PDB    PDBbind3-mer
1b1hRCSB PDB    PDBbind3-mer
1b2hRCSB PDB    PDBbind3-mer
1b32RCSB PDB    PDBbind3-mer
1b3fRCSB PDB    PDBbind3-mer
1b3gRCSB PDB    PDBbind3-mer
1b3hRCSB PDB    PDBbind3-mer
1b3lRCSB PDB    PDBbind3-mer
1b40RCSB PDB    PDBbind3-mer
1b46RCSB PDB    PDBbind3-mer
1b4hRCSB PDB    PDBbind3-mer
1b4zRCSB PDB    PDBbind3-mer
1b51RCSB PDB    PDBbind3-mer
1b52RCSB PDB    PDBbind3-mer
1b58RCSB PDB    PDBbind3-mer
1b5hRCSB PDB    PDBbind3-mer
1b5iRCSB PDB    PDBbind3-mer
1b5jRCSB PDB    PDBbind3-mer
1b6hRCSB PDB    PDBbind3-mer
1b7hRCSB PDB    PDBbind3-mer
1b9jRCSB PDB    PDBbind3-mer
1bm6RCSB PDB    PDBbind3-mer
1eubRCSB PDB    PDBbind3-mer
1fwuRCSB PDB    PDBbind3-mer
1fwvRCSB PDB    PDBbind3-mer
1gmyRCSB PDB    PDBbind3-mer
1hkjRCSB PDB    PDBbind3-mer
1hkkRCSB PDB    PDBbind3-mer
1hkmRCSB PDB    PDBbind3-mer
1jetRCSB PDB    PDBbind3-mer
1jeuRCSB PDB    PDBbind3-mer
1jevRCSB PDB    PDBbind3-mer
1jlxRCSB PDB    PDBbind3-mer
1jrsRCSB PDB    PDBbind3-mer
1kjrRCSB PDB    PDBbind3-mer
1kugRCSB PDB    PDBbind3-mer
1kuiRCSB PDB    PDBbind3-mer
1kukRCSB PDB    PDBbind3-mer
1ll4RCSB PDB    PDBbind3-mer
1m7dRCSB PDB    PDBbind3-mer
1mfaRCSB PDB    PDBbind3-mer
1mfdRCSB PDB    PDBbind3-mer
1nu8RCSB PDB    PDBbind3-mer
1oggRCSB PDB    PDBbind3-mer
1qkaRCSB PDB    PDBbind3-mer
1qkbRCSB PDB    PDBbind3-mer
1uleRCSB PDB    PDBbind3-mer
1ur9RCSB PDB    PDBbind3-mer
1ux7RCSB PDB    PDBbind3-mer
1uz8RCSB PDB    PDBbind3-mer
1w3lRCSB PDB    PDBbind3-mer
1y3gRCSB PDB    PDBbind3-mer
2eukRCSB PDB    PDBbind3-mer
2eumRCSB PDB    PDBbind3-mer
2evlRCSB PDB    PDBbind3-mer
2jdhRCSB PDB    PDBbind3-mer
2jdkRCSB PDB    PDBbind3-mer
2liqRCSB PDB    PDBbind3-mer
2olbRCSB PDB    PDBbind3-mer
2r2bRCSB PDB    PDBbind3-mer
2vxjRCSB PDB    PDBbind3-mer
2w68RCSB PDB    PDBbind3-mer
2w7yRCSB PDB    PDBbind3-mer
2wk2RCSB PDB    PDBbind3-mer
2wm0RCSB PDB    PDBbind3-mer
2xdwRCSB PDB    PDBbind3-mer
2xg3RCSB PDB    PDBbind3-mer
2yjqRCSB PDB    PDBbind3-mer
3afkRCSB PDB    PDBbind3-mer
3ap7RCSB PDB    PDBbind3-mer
3ayaRCSB PDB    PDBbind3-mer
3aydRCSB PDB    PDBbind3-mer
3g19RCSB PDB    PDBbind3-mer
3gxyRCSB PDB    PDBbind3-mer
3m3cRCSB PDB    PDBbind3-mer
3m3eRCSB PDB    PDBbind3-mer
3m3oRCSB PDB    PDBbind3-mer
3mbpRCSB PDB    PDBbind3-mer
3rseRCSB PDB    PDBbind3-mer
3tcgRCSB PDB    PDBbind3-mer
4bgyRCSB PDB    PDBbind3-mer
4bh3RCSB PDB    PDBbind3-mer
4bh4RCSB PDB    PDBbind3-mer
4c1uRCSB PDB    PDBbind3-mer
4dj7RCSB PDB    PDBbind3-mer
4g0aRCSB PDB    PDBbind3-mer
4g68RCSB PDB    PDBbind3-mer
4gzwRCSB PDB    PDBbind3-mer
4hpiRCSB PDB    PDBbind3-mer
4hxjRCSB PDB    PDBbind3-mer
4igqRCSB PDB    PDBbind3-mer
4je8RCSB PDB    PDBbind3-mer
4k64RCSB PDB    PDBbind3-mer
4k67RCSB PDB    PDBbind3-mer
4lblRCSB PDB    PDBbind3-mer
4lboRCSB PDB    PDBbind3-mer
4lkgRCSB PDB    PDBbind3-mer
4lkjRCSB PDB    PDBbind3-mer
4m7jRCSB PDB    PDBbind3-mer
5gluRCSB PDB    PDBbind3-mer
5mxoRCSB PDB    PDBbind3-mer
5t54RCSB PDB    PDBbind3-mer
5tpbRCSB PDB    PDBbind3-mer
5ufcRCSB PDB    PDBbind3-mer
5xhsRCSB PDB    PDBbind3-mer
6df1RCSB PDB    PDBbind3-mer
6df2RCSB PDB    PDBbind3-mer
6fhuRCSB PDB    PDBbind3-mer
6m9cRCSB PDB    PDBbind3-mer
6m9dRCSB PDB    PDBbind3-mer
6phxRCSB PDB    PDBbind3-mer
6p7pRCSB PDB    PDBbind3-mer
6k2nRCSB PDB    PDBbind3-mer
6ihtRCSB PDB    PDBbind3-mer
6idzRCSB PDB    PDBbind3-mer
6idbRCSB PDB    PDBbind3-mer
Entry Information
PDB ID4d2d
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDI-OR TRIPEPTIDE:H+ SYMPORTER
Ligand Name3-mer
EC.Number E.C.-.-.-.-
Resolution 2.52(Å)
Affinity (Kd/Ki/IC50)IC50=340uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Embo Rep. Vol. 15: pp. 886-893
Ligand Properties
Formula C9H18N3O4
Molecular Weight 232.257
Exact Mass 232.130
No. of atoms 34
No. of bonds 33
Polar Surface Area 123.14
LOGP Value -2.62      (Computed with XLOGP3)
-1.51      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q5M4H8  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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