Browse entries in the PDBbind-CN Database

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Related entries of code: 4d8e
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2uzjRCSB PDB    PDBbind253aa, >2UZJ_1|Chains... at 99%
4d8iRCSB PDB    PDBbind261aa, >4D8I_1|Chain... at 100%
4rkxRCSB PDB    PDBbind261aa, >4RKX_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1tloRCSB PDB    PDBbindE64
2preRCSB PDB    PDBbindE64
2uzjRCSB PDB    PDBbindE64
3bcnRCSB PDB    PDBbindE64
3c9eRCSB PDB    PDBbindE64
Entry Information
PDB ID4d8e
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameStreptopain
Ligand NameE64
EC.Number E.C.3.4.22.10
Resolution 1.5(Å)
Affinity (Kd/Ki/IC50)IC50=98nM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) J.Biol.Chem. Vol. 287: pp. 24412-24426
Ligand Properties
Formula C15H30N5O5
Molecular Weight 360.429
Exact Mass 360.225
No. of atoms 55
No. of bonds 54
Polar Surface Area 181.74
LOGP Value 2.20      (Computed with XLOGP3)
-1.21      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 14
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACNo matched UniProt accession number (AC) found!
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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