Browse entries in the PDBbind-CN Database

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Related entries of code: 4dgm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1f0qRCSB PDB    PDBbind332aa, >1F0Q_1|Chain... at 99%
1m2pRCSB PDB    PDBbind325aa, >1M2P_1|Chain... at 99%
1m2qRCSB PDB    PDBbind327aa, >1M2Q_1|Chain... at 99%
1m2rRCSB PDB    PDBbind327aa, >1M2R_1|Chain... at 99%
1om1RCSB PDB    PDBbind332aa, >1OM1_1|Chain... at 99%
1zoeRCSB PDB    PDBbind332aa, >1ZOE_1|Chain... at 99%
1zogRCSB PDB    PDBbind332aa, >1ZOG_1|Chain... at 99%
1zohRCSB PDB    PDBbind332aa, >1ZOH_1|Chain... at 99%
2oxdRCSB PDB    PDBbind332aa, >2OXD_1|Chain... at 99%
2oxxRCSB PDB    PDBbind332aa, >2OXX_1|Chain... at 99%
2oxyRCSB PDB    PDBbind332aa, >2OXY_1|Chains... at 99%
2pvhRCSB PDB    PDBbind352aa, >2PVH_1|Chain... *
2pvjRCSB PDB    PDBbind352aa, >2PVJ_1|Chain... at 100%
2pvkRCSB PDB    PDBbind352aa, >2PVK_1|Chain... at 100%
2pvlRCSB PDB    PDBbind352aa, >2PVL_1|Chain... at 100%
2pvmRCSB PDB    PDBbind352aa, >2PVM_1|Chain... at 100%
2pvnRCSB PDB    PDBbind352aa, >2PVN_1|Chain... at 100%
2qc6RCSB PDB    PDBbind332aa, >2QC6_1|Chain... at 99%
3be9RCSB PDB    PDBbind352aa, >3BE9_1|Chain... at 100%
3fl5RCSB PDB    PDBbind332aa, >3FL5_1|Chain... at 99%
3pwdRCSB PDB    PDBbind332aa, >3PWD_1|Chain... at 99%
4anmRCSB PDB    PDBbind335aa, >4ANM_1|Chain... at 98%
4dgnRCSB PDB    PDBbind326aa, >4DGN_1|Chain... at 99%
6qs5RCSB PDB    PDBbind325aa, >6QS5_1|Chain... at 99%
4rlkRCSB PDB    PDBbind332aa, >4RLK_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3cf9RCSB PDB    PDBbindAGI
4derRCSB PDB    PDBbindAGI
4hkkRCSB PDB    PDBbindAGI
5auvRCSB PDB    PDBbindAGI
Entry Information
PDB ID4dgm
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameCasein kinase II subunit alpha
Ligand NameAGI
EC.Number E.C.2.7.11.1
Resolution 1.65(Å)
Affinity (Kd/Ki/IC50)IC50=1.2uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Biochemistry Vol. 51: pp. 6097-6107
Ligand Properties
Formula C15H10O5
Molecular Weight 270.237
Exact Mass 270.053
No. of atoms 30
No. of bonds 32
Polar Surface Area 90.9
LOGP Value 2.67      (Computed with XLOGP3)
2.58      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P28523  
Entrez Gene IDNCBI Entrez Gene ID: 542637  
ASDInformation of known allosteric effects of PDB entries
 
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